| 186 | } |
| 187 | |
| 188 | void WriteDocument(std::ostream& stream, const mitk::Image* image, const mitk::Image* mask, |
| 189 | const mitk::AbstractGlobalImageFeature::FeatureListType& features, const std::string& methodName, |
| 190 | const std::string& organisation, const std::string& version, const std::string& pipelineUID, |
| 191 | const std::map<std::string, us::Any>& cliArgs) |
| 192 | { |
| 193 | tinyxml2::XMLDocument doc; |
| 194 | doc.InsertEndChild(doc.NewDeclaration()); |
| 195 | |
| 196 | auto* rootNode = doc.NewElement("mp:measurement"); |
| 197 | rootNode->SetAttribute("xmlns:mp", "https://www.mitk.org/Phenotyping"); |
| 198 | doc.InsertEndChild(rootNode); |
| 199 | |
| 200 | auto* methodNode = doc.NewElement("mp:measurementMethod"); |
| 201 | rootNode->InsertEndChild(methodNode); |
| 202 | |
| 203 | auto* methodNameNode = doc.NewElement("mp:name"); |
| 204 | auto* valueText = doc.NewText(methodName.c_str()); |
| 205 | methodNameNode->InsertEndChild(valueText); |
| 206 | methodNode->InsertEndChild(methodNameNode); |
| 207 | |
| 208 | auto* organisationNode = doc.NewElement("mp:organisation"); |
| 209 | valueText = doc.NewText(organisation.c_str()); |
| 210 | organisationNode->InsertEndChild(valueText); |
| 211 | methodNode->InsertEndChild(organisationNode); |
| 212 | |
| 213 | auto* versionNode = doc.NewElement("mp:version"); |
| 214 | valueText = doc.NewText(version.c_str()); |
| 215 | versionNode->InsertEndChild(valueText); |
| 216 | methodNode->InsertEndChild(versionNode); |
| 217 | |
| 218 | auto* imageNode = doc.NewElement("mp:image"); |
| 219 | rootNode->InsertEndChild(imageNode); |
| 220 | |
| 221 | AddSeriesInstanceUID(image, imageNode); |
| 222 | AddFilePath(image, imageNode); |
| 223 | AddSOPInstanceUIDs(image, imageNode); |
| 224 | AddReaderInfo(image,imageNode); |
| 225 | |
| 226 | |
| 227 | auto* maskNode = doc.NewElement("mp:mask"); |
| 228 | rootNode->InsertEndChild(maskNode); |
| 229 | |
| 230 | AddSeriesInstanceUID(mask, maskNode); |
| 231 | AddFilePath(mask, maskNode); |
| 232 | AddSOPInstanceUIDs(mask, maskNode); |
| 233 | AddReaderInfo(mask, maskNode); |
| 234 | |
| 235 | //todo mask reader meta info |
| 236 | |
| 237 | AddDateAndTime(rootNode); |
| 238 | |
| 239 | auto* pipelineNode = doc.NewElement("mp:pipelineUID"); |
| 240 | valueText = doc.NewText(pipelineUID.c_str()); |
| 241 | pipelineNode->InsertEndChild(valueText); |
| 242 | rootNode->InsertEndChild(pipelineNode); |
| 243 | |
| 244 | auto* paramsNode = doc.NewElement("mp:parameters"); |
| 245 | rootNode->InsertEndChild(paramsNode); |
no test coverage detected