Function main

Modules/Classification/CLMiniApps/CLGlobalImageFeatures.cpp:362–784

}

int main(int argc, char* argv[])
{
  // Commented : Updated to a common interface, include, if possible, mask is type unsigned short, uses Quantification, Comments
  //                                 Name follows standard scheme with Class Name::Feature Name
  // Commented 2: Updated to use automatic inclusion of list of parameters if required.
  mitk::GIFImageDescriptionFeatures::Pointer ipCalculator = mitk::GIFImageDescriptionFeatures::New(); // Commented 2, Tested
  mitk::GIFFirstOrderStatistics::Pointer firstOrderCalculator = mitk::GIFFirstOrderStatistics::New(); //Commented 2
  mitk::GIFFirstOrderHistogramStatistics::Pointer firstOrderHistoCalculator = mitk::GIFFirstOrderHistogramStatistics::New(); // Commented 2, Tested
  mitk::GIFFirstOrderNumericStatistics::Pointer firstOrderNumericCalculator = mitk::GIFFirstOrderNumericStatistics::New(); // Commented 2, Tested
  mitk::GIFVolumetricStatistics::Pointer volCalculator = mitk::GIFVolumetricStatistics::New();   // Commented 2, Tested
  mitk::GIFVolumetricDensityStatistics::Pointer voldenCalculator = mitk::GIFVolumetricDensityStatistics::New(); // Commented 2, Tested
  mitk::GIFCooccurenceMatrix::Pointer coocCalculator = mitk::GIFCooccurenceMatrix::New(); // Commented 2, Will not be tested
  mitk::GIFCooccurenceMatrix2::Pointer cooc2Calculator = mitk::GIFCooccurenceMatrix2::New(); //Commented 2
  mitk::GIFNeighbouringGreyLevelDependenceFeature::Pointer ngldCalculator = mitk::GIFNeighbouringGreyLevelDependenceFeature::New(); //Commented 2, Tested
  mitk::GIFGreyLevelRunLength::Pointer rlCalculator = mitk::GIFGreyLevelRunLength::New(); // Commented 2
  mitk::GIFGreyLevelSizeZone::Pointer glszCalculator = mitk::GIFGreyLevelSizeZone::New(); // Commented 2, Tested
  mitk::GIFGreyLevelDistanceZone::Pointer gldzCalculator = mitk::GIFGreyLevelDistanceZone::New(); //Commented 2, Tested
  mitk::GIFLocalIntensity::Pointer lociCalculator = mitk::GIFLocalIntensity::New(); //Commented 2, Tested
  mitk::GIFIntensityVolumeHistogramFeatures::Pointer ivohCalculator = mitk::GIFIntensityVolumeHistogramFeatures::New(); // Commented 2
  mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::Pointer ngtdCalculator = mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::New(); //Commented 2, Tested
  mitk::GIFCurvatureStatistic::Pointer curvCalculator = mitk::GIFCurvatureStatistic::New(); //Commented 2, Tested

  std::vector<mitk::AbstractGlobalImageFeature::Pointer> features;
  features.push_back(volCalculator.GetPointer());
  features.push_back(voldenCalculator.GetPointer());
  features.push_back(curvCalculator.GetPointer());
  features.push_back(firstOrderCalculator.GetPointer());
  features.push_back(firstOrderNumericCalculator.GetPointer());
  features.push_back(firstOrderHistoCalculator.GetPointer());
  features.push_back(ivohCalculator.GetPointer());
  features.push_back(lociCalculator.GetPointer());
  features.push_back(coocCalculator.GetPointer());
  features.push_back(cooc2Calculator.GetPointer());
  features.push_back(ngldCalculator.GetPointer());
  features.push_back(rlCalculator.GetPointer());
  features.push_back(glszCalculator.GetPointer());
  features.push_back(gldzCalculator.GetPointer());
  features.push_back(ipCalculator.GetPointer());
  features.push_back(ngtdCalculator.GetPointer());

  mitkCommandLineParser parser;
  parser.setArgumentPrefix("--", "-");
  mitk::cl::GlobalImageFeaturesParameter param;
  param.AddParameter(parser);

  parser.addArgument("--","-", mitkCommandLineParser::String, "---", "---", us::Any(),true);
  for (auto cFeature : features)
  {
    cFeature->AddArguments(parser);
  }

  parser.addArgument("--", "-", mitkCommandLineParser::String, "---", "---", us::Any(), true);
  parser.addArgument("description","d",mitkCommandLineParser::String,"Text","Description that is added to the output",us::Any());
  parser.addArgument("direction", "dir", mitkCommandLineParser::String, "Int", "Allows to specify the direction for Cooc and RL. 0: All directions, 1: Only single direction (Test purpose), 2,3,4... Without dimension 0,1,2... ", us::Any());
  parser.addArgument("slice-wise", "slice", mitkCommandLineParser::String, "Int", "Allows to specify if the image is processed slice-wise (number giving direction) ", us::Any());
  parser.addArgument("output-mode", "omode", mitkCommandLineParser::Int, "Int", "Defines the format of the output. 0: (Default) results of an image / slice are written in a single row;"
    " 1: results of an image / slice are written in a single column; 2: store the result of on image as structured radiomocs report (XML).");