Construct batch script manager. Args: script_file (str): Script file. work_dir (str, optional): Working directory (default: current working directory). interpreter (str, optional): Script interpreter (default: /bin/bash).
(self,
script_file=None,
work_dir=os.getcwd(),
interpreter='/bin/bash')
| 18 | """ |
| 19 | |
| 20 | def __init__(self, |
| 21 | script_file=None, |
| 22 | work_dir=os.getcwd(), |
| 23 | interpreter='/bin/bash'): |
| 24 | """Construct batch script manager. |
| 25 | |
| 26 | Args: |
| 27 | script_file (str): Script file. |
| 28 | work_dir (str, optional): Working directory |
| 29 | (default: current working directory). |
| 30 | interpreter (str, optional): Script interpreter |
| 31 | (default: /bin/bash). |
| 32 | |
| 33 | """ |
| 34 | |
| 35 | # Lines in script are stored as lists of strings |
| 36 | self.header = [] |
| 37 | self.body = [] |
| 38 | |
| 39 | # Construct file paths |
| 40 | self.work_dir = os.path.realpath(work_dir) |
| 41 | self.script_file = script_file |
| 42 | if not self.script_file: |
| 43 | self.script_file = os.path.join(self.work_dir, 'batch.sh') |
| 44 | self.script_file = os.path.realpath(self.script_file) |
| 45 | self.out_log_file = os.path.join(self.work_dir, 'out.log') |
| 46 | self.err_log_file = os.path.join(self.work_dir, 'err.log') |
| 47 | |
| 48 | # Shebang line |
| 49 | if interpreter: |
| 50 | self.add_header_line('#!{}'.format(interpreter)) |
| 51 | |
| 52 | def add_header_line(self, line): |
| 53 | """Add line to script header. |
nothing calls this directly
no test coverage detected