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Functions
862 in github.com/Koeng101/dnadesign
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Functions
862
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Types & classes
212
Function
TestOptimizeErrorsOnEmptyAminoAcidString
(t *testing.T)
lib/synthesis/codon/codon_test.go:141
Function
TestOptimizeErrorsOnInvalidAminoAcid
(t *testing.T)
lib/synthesis/codon/codon_test.go:149
Function
TestOptimizePerPositionSampling
TestOptimizePerPositionSampling guards against a regression where Optimize re-seeded the RNG from the same state at every codon, so every instance of
lib/synthesis/codon/codon_test.go:125
Function
TestOptimizeSameSeed
(t *testing.T)
lib/synthesis/codon/codon_test.go:77
Function
TestOptimizeSequence
(t *testing.T)
lib/synthesis/codon/codon_test.go:325
Function
TestPanicGoldenGate
This was a previous regression test. However, now ligate only outputs a single construct as an output. If we change in the future for multiple ligatio
lib/clone/clone_test.go:193
Function
TestPanicIndex
(t *testing.T)
lib/synthesis/fix/synthesis_test.go:208
Function
TestParse
(t *testing.T)
lib/bio/slow5/slow5_test.go:13
Function
TestParse
(t *testing.T)
lib/bio/pileup/pileup_test.go:12
Function
TestParse
(t *testing.T)
lib/bio/sam/sam_test.go:13
Function
TestParseExceptions
(t *testing.T)
lib/bio/fastq/fastq_test.go:25
Function
TestParseImproperHeaders
(t *testing.T)
lib/bio/slow5/slow5_test.go:48
Function
TestParseMultiNth
(t *testing.T)
lib/bio/genbank/genbank_test.go:381
Function
TestParseReads
(t *testing.T)
lib/bio/slow5/slow5_test.go:108
Function
TestParseReferences_error
(t *testing.T)
lib/bio/genbank/genbank_test.go:714
Function
TestParse_error
(t *testing.T)
lib/bio/rebase/rebase_test.go:17
Function
TestParse_error
(t *testing.T)
lib/bio/genbank/genbank_test.go:694
Function
TestParser
(t *testing.T)
lib/bio/fastq/fastq_test.go:34
Function
TestParser
(t *testing.T)
lib/bio/fasta/fasta_test.go:18
Function
TestPartialLocationParseRegression
(t *testing.T)
lib/bio/genbank/genbank_test.go:142
Function
TestPileup
(t *testing.T)
external/samtools/samtools_test.go:13
Function
TestPrimary
(t *testing.T)
lib/bio/sam/sam_test.go:270
Function
TestPrimerEdgeRegression
(t *testing.T)
lib/sequencing/barcoding/barcoding_test.go:89
Function
TestPropertyAccess
(t *testing.T)
lib/bio/uniref/uniref_test.go:185
Function
TestRandomProteinSequence
(t *testing.T)
lib/random/random_test.go:17
Function
TestRandomProteinSequenceError
Write a new case of test when you have a n inferior than 3
lib/random/random_test.go:36
Function
TestRead
(t *testing.T)
lib/bio/rebase/rebase_test.go:10
Function
TestRead
(t *testing.T)
lib/bio/uniprot/uniprot_test.go:17
Function
TestRead
(t *testing.T)
lib/bio/genbank/genbank_test.go:512
Function
TestReadEmptyFasta
TestReadEmptyFasta tests that an empty fasta file is parsed correctly.
lib/bio/fasta/fasta_test.go:66
Function
TestReadEmptySequence
(t *testing.T)
lib/bio/fasta/fasta_test.go:90
Function
TestReadMulti
(t *testing.T)
lib/bio/genbank/genbank_test.go:552
Function
TestRead_error
(t *testing.T)
lib/bio/rebase/rebase_test.go:32
Function
TestRead_error
(t *testing.T)
lib/bio/genbank/genbank_test.go:665
Function
TestRead_multipleRefs
(t *testing.T)
lib/bio/rebase/rebase_test.go:47
Function
TestRebase
(t *testing.T)
lib/bio/rebase/rebase_test.go:73
Function
TestRecursiveFragment
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:108
Function
TestRecursiveFragmentPy
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:122
Function
TestReference_addKey
(t *testing.T)
lib/bio/genbank/genbank_test.go:454
Function
TestRegressionTestMatching12
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:88
Function
TestReverse
(t *testing.T)
lib/transform/transform_test.go:10
Function
TestReverseComplement
(t *testing.T)
lib/transform/transform_test.go:47
Function
TestReverseComplementRNA
(t *testing.T)
lib/transform/transform_test.go:152
Function
TestReversion
(t *testing.T)
lib/synthesis/fix/synthesis_test.go:61
Function
TestSantaLucia
(t *testing.T)
lib/primers/primers_test.go:41
Function
TestSantaLuciaReverseComplement
(t *testing.T)
lib/primers/primers_test.go:52
Function
TestSequenceData
(t *testing.T)
lib/bio/uniref/uniref_test.go:151
Function
TestSequenceQualityLength
(t *testing.T)
lib/bio/fastq/fastq_test.go:51
Function
TestSimpleExample
(t *testing.T)
lib/bio/slow5/slow5_test.go:208
Function
TestSimulateCircular
(t *testing.T)
lib/primers/pcr/pcr_test.go:45
Function
TestSimulateConcatemerization
(t *testing.T)
lib/primers/pcr/pcr_test.go:63
Function
TestSimulateMoreThanOneForward
(t *testing.T)
lib/primers/pcr/pcr_test.go:21
Function
TestSimulatePrimerRejection
(t *testing.T)
lib/primers/pcr/pcr_test.go:12
Function
TestSmallFragmentSize
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:48
Function
TestSmithWaterman
(t *testing.T)
lib/align/align_test.go:139
Function
TestSnapgeneGenbankRegression
(t *testing.T)
lib/bio/genbank/genbank_test.go:189
Function
TestSubLocationStringParseRegression
(t *testing.T)
lib/bio/genbank/genbank_test.go:164
Function
TestSubstitutionMatrix
(t *testing.T)
lib/align/matrix/matrix_test.go:10
Function
TestSvb
(t *testing.T)
lib/bio/slow5/slow5_test.go:225
Function
TestTooMuchRepeat
(t *testing.T)
lib/synthesis/fix/synthesis_test.go:185
Function
TestTranslation
(t *testing.T)
lib/synthesis/codon/codon_test.go:18
Function
TestTranslationErrorsOnEmptyAminoAcidString
(t *testing.T)
lib/synthesis/codon/codon_test.go:27
Function
TestTranslationLowerCase
(t *testing.T)
lib/synthesis/codon/codon_test.go:44
Function
TestTranslationMixedCase
(t *testing.T)
lib/synthesis/codon/codon_test.go:36
Function
TestTryGo
(t *testing.T)
lib/bio/errgroup/errgroup_test.go:180
Function
TestUint32Decode128
(t *testing.T)
lib/bio/slow5/svb/decoder_amd64_test.go:14
Function
TestUint32Decode256
(t *testing.T)
lib/bio/slow5/svb/decoder_amd64_test.go:42
Function
TestUint32Decode32
(t *testing.T)
lib/bio/slow5/svb/decoder_test.go:9
Function
TestUint32Decode512
(t *testing.T)
lib/bio/slow5/svb/decoder_amd64_test.go:70
Function
TestUnfragmentable
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:25
Function
TestUniRefVersions
(t *testing.T)
lib/bio/uniref/uniref_test.go:83
Function
TestValidate
TestValidate ensures that every aspect of validation is covered
lib/bio/sam/sam_test.go:68
Function
TestValidateAllInOne
TestValidateAllInOne - testing all validation rules in one function
lib/bio/sam/sam_test.go:147
Function
TestViennaRNAFold
(t *testing.T)
lib/fold/fold_test.go:25
Function
TestViennaRNAFoldDanglingModels
(t *testing.T)
lib/fold/linearfold/linearfold_test.go:57
Function
TestWithContext
(t *testing.T)
lib/bio/errgroup/errgroup_test.go:139
Function
TestWrapString
* The MIT License (MIT) Copyright (c) 2014 Mitchell Hashimoto Permission is hereby granted, free of charge, to any person obtaining a copy of this s
lib/bio/genbank/wordwrap_test.go:20
Function
TestWrite
(t *testing.T)
lib/bio/slow5/slow5_test.go:149
Function
TestWrite
(t *testing.T)
lib/bio/fasta/fasta_test.go:154
Function
TestWriteCodonJSON
****************************************************************************** JSON related tests begin here. **************************************
lib/synthesis/codon/codon_test.go:210
Function
TestWriteTo
(t *testing.T)
lib/bio/sam/sam_test.go:48
Function
TestXMLExport
(t *testing.T)
lib/bio/uniref/uniref_test.go:212
Function
TestZeroGroup
(t *testing.T)
lib/bio/errgroup/errgroup_test.go:104
Function
TestZuker
(t *testing.T)
lib/fold/fold_test.go:40
Function
Test_buildMetaString
(t *testing.T)
lib/bio/genbank/genbank_test.go:604
Function
Test_cartRunes
(t *testing.T)
lib/transform/variants/variants_test.go:60
Function
Test_generateWhiteSpace
(t *testing.T)
lib/bio/genbank/genbank_test.go:645
Function
Test_parseLocation
(t *testing.T)
lib/bio/genbank/genbank_test.go:578
Function
Test_parseLocus
(t *testing.T)
lib/bio/genbank/genbank_test.go:492
Function
Test_parseLoopParameters_init
(t *testing.T)
lib/bio/genbank/genbank_test.go:341
Function
Test_parseMetadata
(t *testing.T)
lib/bio/genbank/genbank_test.go:408
Function
Test_parseReferences
(t *testing.T)
lib/bio/genbank/genbank_test.go:428
Function
Uint32Decode
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder.go:21
Function
Uint32Decode128
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder_stub.go:11
Function
Uint32Decode256
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder_stub.go:8
Function
Uint32Decode512
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder_stub.go:5
Method
UnmarshalText
(text []byte)
lib/bio/uniprot/xml.go:513
Method
UnmarshalXML
(d *xml.Decoder, start xml.StartElement)
lib/bio/uniprot/xml.go:89
Method
UnmarshalXML
(d *xml.Decoder, start xml.StartElement)
lib/bio/uniprot/xml.go:178
Method
UnmarshalXML
(d *xml.Decoder, start xml.StartElement)
lib/bio/uniprot/xml.go:356
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