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Functions862 in github.com/Koeng101/dnadesign

FunctionTestOptimizeErrorsOnEmptyAminoAcidString
(t *testing.T)
lib/synthesis/codon/codon_test.go:141
FunctionTestOptimizeErrorsOnInvalidAminoAcid
(t *testing.T)
lib/synthesis/codon/codon_test.go:149
FunctionTestOptimizePerPositionSampling
TestOptimizePerPositionSampling guards against a regression where Optimize re-seeded the RNG from the same state at every codon, so every instance of
lib/synthesis/codon/codon_test.go:125
FunctionTestOptimizeSameSeed
(t *testing.T)
lib/synthesis/codon/codon_test.go:77
FunctionTestOptimizeSequence
(t *testing.T)
lib/synthesis/codon/codon_test.go:325
FunctionTestPanicGoldenGate
This was a previous regression test. However, now ligate only outputs a single construct as an output. If we change in the future for multiple ligatio
lib/clone/clone_test.go:193
FunctionTestPanicIndex
(t *testing.T)
lib/synthesis/fix/synthesis_test.go:208
FunctionTestParse
(t *testing.T)
lib/bio/slow5/slow5_test.go:13
FunctionTestParse
(t *testing.T)
lib/bio/pileup/pileup_test.go:12
FunctionTestParse
(t *testing.T)
lib/bio/sam/sam_test.go:13
FunctionTestParseExceptions
(t *testing.T)
lib/bio/fastq/fastq_test.go:25
FunctionTestParseImproperHeaders
(t *testing.T)
lib/bio/slow5/slow5_test.go:48
FunctionTestParseMultiNth
(t *testing.T)
lib/bio/genbank/genbank_test.go:381
FunctionTestParseReads
(t *testing.T)
lib/bio/slow5/slow5_test.go:108
FunctionTestParseReferences_error
(t *testing.T)
lib/bio/genbank/genbank_test.go:714
FunctionTestParse_error
(t *testing.T)
lib/bio/rebase/rebase_test.go:17
FunctionTestParse_error
(t *testing.T)
lib/bio/genbank/genbank_test.go:694
FunctionTestParser
(t *testing.T)
lib/bio/fastq/fastq_test.go:34
FunctionTestParser
(t *testing.T)
lib/bio/fasta/fasta_test.go:18
FunctionTestPartialLocationParseRegression
(t *testing.T)
lib/bio/genbank/genbank_test.go:142
FunctionTestPileup
(t *testing.T)
external/samtools/samtools_test.go:13
FunctionTestPrimary
(t *testing.T)
lib/bio/sam/sam_test.go:270
FunctionTestPrimerEdgeRegression
(t *testing.T)
lib/sequencing/barcoding/barcoding_test.go:89
FunctionTestPropertyAccess
(t *testing.T)
lib/bio/uniref/uniref_test.go:185
FunctionTestRandomProteinSequence
(t *testing.T)
lib/random/random_test.go:17
FunctionTestRandomProteinSequenceError
Write a new case of test when you have a n inferior than 3
lib/random/random_test.go:36
FunctionTestRead
(t *testing.T)
lib/bio/rebase/rebase_test.go:10
FunctionTestRead
(t *testing.T)
lib/bio/uniprot/uniprot_test.go:17
FunctionTestRead
(t *testing.T)
lib/bio/genbank/genbank_test.go:512
FunctionTestReadEmptyFasta
TestReadEmptyFasta tests that an empty fasta file is parsed correctly.
lib/bio/fasta/fasta_test.go:66
FunctionTestReadEmptySequence
(t *testing.T)
lib/bio/fasta/fasta_test.go:90
FunctionTestReadMulti
(t *testing.T)
lib/bio/genbank/genbank_test.go:552
FunctionTestRead_error
(t *testing.T)
lib/bio/rebase/rebase_test.go:32
FunctionTestRead_error
(t *testing.T)
lib/bio/genbank/genbank_test.go:665
FunctionTestRead_multipleRefs
(t *testing.T)
lib/bio/rebase/rebase_test.go:47
FunctionTestRebase
(t *testing.T)
lib/bio/rebase/rebase_test.go:73
FunctionTestRecursiveFragment
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:108
FunctionTestRecursiveFragmentPy
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:122
FunctionTestReference_addKey
(t *testing.T)
lib/bio/genbank/genbank_test.go:454
FunctionTestRegressionTestMatching12
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:88
FunctionTestReverse
(t *testing.T)
lib/transform/transform_test.go:10
FunctionTestReverseComplement
(t *testing.T)
lib/transform/transform_test.go:47
FunctionTestReverseComplementRNA
(t *testing.T)
lib/transform/transform_test.go:152
FunctionTestReversion
(t *testing.T)
lib/synthesis/fix/synthesis_test.go:61
FunctionTestSantaLucia
(t *testing.T)
lib/primers/primers_test.go:41
FunctionTestSantaLuciaReverseComplement
(t *testing.T)
lib/primers/primers_test.go:52
FunctionTestSequenceData
(t *testing.T)
lib/bio/uniref/uniref_test.go:151
FunctionTestSequenceQualityLength
(t *testing.T)
lib/bio/fastq/fastq_test.go:51
FunctionTestSimpleExample
(t *testing.T)
lib/bio/slow5/slow5_test.go:208
FunctionTestSimulateCircular
(t *testing.T)
lib/primers/pcr/pcr_test.go:45
FunctionTestSimulateConcatemerization
(t *testing.T)
lib/primers/pcr/pcr_test.go:63
FunctionTestSimulateMoreThanOneForward
(t *testing.T)
lib/primers/pcr/pcr_test.go:21
FunctionTestSimulatePrimerRejection
(t *testing.T)
lib/primers/pcr/pcr_test.go:12
FunctionTestSmallFragmentSize
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:48
FunctionTestSmithWaterman
(t *testing.T)
lib/align/align_test.go:139
FunctionTestSnapgeneGenbankRegression
(t *testing.T)
lib/bio/genbank/genbank_test.go:189
FunctionTestSubLocationStringParseRegression
(t *testing.T)
lib/bio/genbank/genbank_test.go:164
FunctionTestSubstitutionMatrix
(t *testing.T)
lib/align/matrix/matrix_test.go:10
FunctionTestSvb
(t *testing.T)
lib/bio/slow5/slow5_test.go:225
FunctionTestTooMuchRepeat
(t *testing.T)
lib/synthesis/fix/synthesis_test.go:185
FunctionTestTranslation
(t *testing.T)
lib/synthesis/codon/codon_test.go:18
FunctionTestTranslationErrorsOnEmptyAminoAcidString
(t *testing.T)
lib/synthesis/codon/codon_test.go:27
FunctionTestTranslationLowerCase
(t *testing.T)
lib/synthesis/codon/codon_test.go:44
FunctionTestTranslationMixedCase
(t *testing.T)
lib/synthesis/codon/codon_test.go:36
FunctionTestTryGo
(t *testing.T)
lib/bio/errgroup/errgroup_test.go:180
FunctionTestUint32Decode128
(t *testing.T)
lib/bio/slow5/svb/decoder_amd64_test.go:14
FunctionTestUint32Decode256
(t *testing.T)
lib/bio/slow5/svb/decoder_amd64_test.go:42
FunctionTestUint32Decode32
(t *testing.T)
lib/bio/slow5/svb/decoder_test.go:9
FunctionTestUint32Decode512
(t *testing.T)
lib/bio/slow5/svb/decoder_amd64_test.go:70
FunctionTestUnfragmentable
(t *testing.T)
lib/synthesis/fragment/fragment_test.go:25
FunctionTestUniRefVersions
(t *testing.T)
lib/bio/uniref/uniref_test.go:83
FunctionTestValidate
TestValidate ensures that every aspect of validation is covered
lib/bio/sam/sam_test.go:68
FunctionTestValidateAllInOne
TestValidateAllInOne - testing all validation rules in one function
lib/bio/sam/sam_test.go:147
FunctionTestViennaRNAFold
(t *testing.T)
lib/fold/fold_test.go:25
FunctionTestViennaRNAFoldDanglingModels
(t *testing.T)
lib/fold/linearfold/linearfold_test.go:57
FunctionTestWithContext
(t *testing.T)
lib/bio/errgroup/errgroup_test.go:139
FunctionTestWrapString
* The MIT License (MIT) Copyright (c) 2014 Mitchell Hashimoto Permission is hereby granted, free of charge, to any person obtaining a copy of this s
lib/bio/genbank/wordwrap_test.go:20
FunctionTestWrite
(t *testing.T)
lib/bio/slow5/slow5_test.go:149
FunctionTestWrite
(t *testing.T)
lib/bio/fasta/fasta_test.go:154
FunctionTestWriteCodonJSON
****************************************************************************** JSON related tests begin here. **************************************
lib/synthesis/codon/codon_test.go:210
FunctionTestWriteTo
(t *testing.T)
lib/bio/sam/sam_test.go:48
FunctionTestXMLExport
(t *testing.T)
lib/bio/uniref/uniref_test.go:212
FunctionTestZeroGroup
(t *testing.T)
lib/bio/errgroup/errgroup_test.go:104
FunctionTestZuker
(t *testing.T)
lib/fold/fold_test.go:40
FunctionTest_buildMetaString
(t *testing.T)
lib/bio/genbank/genbank_test.go:604
FunctionTest_cartRunes
(t *testing.T)
lib/transform/variants/variants_test.go:60
FunctionTest_generateWhiteSpace
(t *testing.T)
lib/bio/genbank/genbank_test.go:645
FunctionTest_parseLocation
(t *testing.T)
lib/bio/genbank/genbank_test.go:578
FunctionTest_parseLocus
(t *testing.T)
lib/bio/genbank/genbank_test.go:492
FunctionTest_parseLoopParameters_init
(t *testing.T)
lib/bio/genbank/genbank_test.go:341
FunctionTest_parseMetadata
(t *testing.T)
lib/bio/genbank/genbank_test.go:408
FunctionTest_parseReferences
(t *testing.T)
lib/bio/genbank/genbank_test.go:428
FunctionUint32Decode
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder.go:21
FunctionUint32Decode128
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder_stub.go:11
FunctionUint32Decode256
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder_stub.go:8
FunctionUint32Decode512
(masks, data []byte, out []uint32)
lib/bio/slow5/svb/decoder_stub.go:5
MethodUnmarshalText
(text []byte)
lib/bio/uniprot/xml.go:513
MethodUnmarshalXML
(d *xml.Decoder, start xml.StartElement)
lib/bio/uniprot/xml.go:89
MethodUnmarshalXML
(d *xml.Decoder, start xml.StartElement)
lib/bio/uniprot/xml.go:178
MethodUnmarshalXML
(d *xml.Decoder, start xml.StartElement)
lib/bio/uniprot/xml.go:356
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