***************************************************************************** End Section: Adding Offsets to Matrices ********************************

setStructureType sets the `Type` field of a `StemStructure` based on the number of unpaired nucleotides between the closing and enclosed base pairs.

stemStructure sets the required interior loop nucleotides of a `parseCompound`'s annotatedStructure and returns the `StemStructure` closed by (`closin

Evaluate the free energy contribution of a stem structure. See `EvaluateStemStructure()` for more details.

Traceback thru the pairedMinimumFreeEnergyV(start,end) and unpairedMinimumFreeEnergyW(start,end) caches to find the structure For each step, get to th

weightAminoAcids weights each codon in a codon table according to input string codon frequency, adding weight to the given NCBI base codon table

implemented in cpuidlow_amd64.s

AddCodonTable takes 2 CodonTables and adds them together to create a new codonTable.

Copy creates deep copy of Feature, which supports safe duplication.

CreateBarcodes is a simplified version of CreateBarcodesWithBannedSequences with sane defaults.

CreateBarcodesGcRange creates a list of barcodes within a given GC range.

****************************************************************************** Aug 28, 2024 Clone Package Functions ********************************

DesignPrimers designs two primers to amplify a target sequence and only that target sequence (no overhangs).

DualBarcodeSequence analyzes a sequence for both a forward and reverse barcode pair and returns their well.

EncodeBasePair returns the type of a base pair encoded as an `int`, which is used to access energy paramater values in the `EnergyParams` struct. See

EncodeSequence encodes a sequence into its numerical representation based on `NucleotideEncodedIntMap`.

This calls the actual internet. Removing it because why would you do that. JustErrors illustrates the use of a Group in place of a sync.WaitGroup to s

Pipeline demonstrates the use of a Group to implement a multi-stage pipeline: a version of the MD5All function with bounded parallelism from https://b

This example shows how to generate a new overhang onto a list of overhangs.

ExampleWrite shows basic usage of the writer.