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hub / github.com/KexinZhangResearch/PhysDock

github.com/KexinZhangResearch/PhysDock @main

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670 symbols 2,093 edges 71 files 245 documented · 37%
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Core symbols most depended-on inside this repo

masked_mean
called by 38
PhysDock/utils/tensor_utils.py
to
called by 26
PhysDock/utils/rigid_utils.py
convert_md5_string
called by 23
PhysDock/utils/io_utils.py
detach
called by 18
PhysDock/utils/rigid_utils.py
cat
called by 18
PhysDock/utils/rigid_utils.py
load_txt
called by 18
PhysDock/utils/io_utils.py
query
called by 15
PhysDock/data/tools/nhmmer.py
load_pkl
called by 14
PhysDock/utils/io_utils.py

Shape

Method 292
Function 281
Class 97

Languages

Python100%

Modules by API surface

PhysDock/utils/rigid_utils.py69 symbols
PhysDock/data/tools/templates.py43 symbols
PhysDock/utils/tensor_utils.py40 symbols
PhysDock/models/layers/transformers.py37 symbols
tasks/unicore_train/__init__.py25 symbols
PhysDock/data/tools/parsers.py25 symbols
PhysDock/data/feature_loader_plinder.py25 symbols
PhysDock/models/loss_module3.py21 symbols
PhysDock/models/loss_module2.py21 symbols
PhysDock/models/loss_module.py21 symbols
PhysDock/data/tools/dataset_manager.py21 symbols
PhysDock/data/tools/mmcif_parsing.py20 symbols

For agents

$ claude mcp add PhysDock \
  -- python -m otcore.mcp_server <graph>

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