Functions — github.com/Jennyee1/AcademicAgent

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Functions1,438 in github.com/Jennyee1/AcademicAgent

⨍ Functions 1,438◇ Types & classes 133↳ Endpoints 6

↓ 4 callersMethod_safe

包裹一切 Notion 调用：异常 -> 记日志 -> 返回 None。

src/recorder/notion_client.py:142

↓ 4 callersMethod_save_state

(self)

src/recorder/refactor_recorder.py:459

↓ 4 callersMethodaddItem

(e,t)

lib/tom-select/tom-select.complete.min.js:247

↓ 4 callersFunctioncallout

(text: str, emoji: str = "💡", color: str = "blue_background")

src/recorder/block_builders.py:80

↓ 4 callersMethodclearActiveOption

()

lib/tom-select/tom-select.complete.min.js:200

↓ 4 callersMethodenable

()

lib/tom-select/tom-select.complete.min.js:293

↓ 4 callersMethodextract_images_from_page

提取指定页面中嵌入的图片【工程设计笔记】 - get_images(full=True) 返回该页所有嵌入图片的引用 - 然后通过 extract_image(xref) 获取实际图片数据 - 部分 PDF (如扫

src/core/pdf_parser.py:389

↓ 4 callersFunctioney

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersMethodfit

(self, corpus: list[str])

src/knowledge/semantic_index.py:79

↓ 4 callersMethodgetAdjacent

(e,t,i="option")

lib/tom-select/tom-select.complete.min.js:240

↓ 4 callersFunctionget_analyzer

Initialize graph store and analyzer.

skills/learning_path/scripts/analyze_knowledge.py:38

↓ 4 callersFunctionic

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionim

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionjg

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionjy

()

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionkg

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionkx

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersMethodload

从 JSON 文件加载知识图谱

src/knowledge/graph_store.py:436

↓ 4 callersFunctionlog_model_once

(caller: str, requested: str, response)

src/core/llm_logging.py:11

↓ 4 callersFunctionmE

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionmm

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionnS

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionom

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersMethodopen

()

lib/tom-select/tom-select.complete.min.js:274

↓ 4 callersMethodrun

执行评测，写出所有 artifacts，返回 run_summary。

src/evaluation/runner.py:112

↓ 4 callersFunctionsave_preferences

原子写。

src/runtime/preferences.py:58

↓ 4 callersMethodsetActiveItemClass

(e)

lib/tom-select/tom-select.complete.min.js:195

↓ 4 callersMethodsetTextboxValue

(e="")

lib/tom-select/tom-select.complete.min.js:190

↓ 4 callersMethodshould_retry

(self, step_result: dict, attempt_count: int)

src/runtime/reflector.py:64

↓ 4 callersMethodshowInput

()

lib/tom-select/tom-select.complete.min.js:203

↓ 4 callersFunctionsnapshot_protected

对所有受保护文件取 sha256 快照。

src/evaluation/isolation.py:81

↓ 4 callersFunctionu

(t,e,i,n,o,r)

lib/vis-9.1.2/vis-network.min.js:26

↓ 4 callersFunctionv

lib/tom-select/tom-select.complete.min.js:32

↓ 4 callersMethodvalidate

校验数据集，返回问题列表（空列表 = 通过）。

src/evaluation/dataset.py:136

↓ 4 callersFunctionwm

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionBS

(t,e,i,n,o)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionCo

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionE

(e,t)

lib/tom-select/tom-select.complete.min.js:83

↓ 3 callersFunctionF

(e,t=0)

lib/tom-select/tom-select.complete.min.js:80

↓ 3 callersFunctionJb

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionJl

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionKv

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionM

(e,t)

lib/tom-select/tom-select.complete.min.js:99

↓ 3 callersFunctionMg

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionPy

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionTg

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionU

(e,t)

lib/tom-select/tom-select.complete.min.js:101

↓ 3 callersFunctionUx

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionXc

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersMethod_append_md

(self, text: str)

src/recorder/refactor_recorder.py:311

↓ 3 callersFunction_apply_to_tier_list

对单个 tier (must_have / should_have / may_have) 的实体应用 diff。返回 (kept_or_modified, demoted_to_other_tier, promoted_to_other_tier) drop 的项不在任何返回里

scripts/apply_gold_reviews.py:106

↓ 3 callersFunction_build_parser

()

src/evaluation/cli.py:208

↓ 3 callersFunction_entity_diff_index

把 reviewers 在 must_have_diff/should_have_diff/may_have_diff 上的判断按 label 聚合。

scripts/apply_gold_reviews.py:56

↓ 3 callersFunction_g

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersMethod_get_encoder

复用 semantic_index 的 sentence-transformer；不可用时返回 None。

src/knowledge/entity_linker.py:164

↓ 3 callersMethod_headers

(self)

src/recorder/notion_client.py:150

↓ 3 callersFunction_load_analyzer

(ctx: AdapterContext)

src/evaluation/adapters/learning_path.py:13

↓ 3 callersFunction_norm

(s: str)

src/evaluation/metrics/capability.py:12

↓ 3 callersFunction_normalize_title

标题标准化：小写 + 去除标点 + 压缩空格用于模糊匹配，容忍大小写和标点差异。例如： "ReAct: Synergizing Reasoning and Acting in Language Models" → "react synergiz

src/core/paper_registry.py:106

↓ 3 callersFunction_now_local_str

YYYY-MM-DD HH:MM 本地时间字符串（md 标题用）。

src/recorder/refactor_recorder.py:53

↓ 3 callersMethod_push_blocks

(self, blocks: list[dict])

src/recorder/refactor_recorder.py:363

↓ 3 callersFunction_repro_command

(task_id: str, dataset_path, run_dir)

src/evaluation/failure_cards.py:140

↓ 3 callersFunction_rule

(category: str)

src/evaluation/failure_cards.py:136

↓ 3 callersFunction_section

(label: str)

src/evaluation/auto_rca.py:190

↓ 3 callersFunction_seed_run_dir

造一个 fake run 目录，包含 run_summary / failure_cards / traces。

tests/test_evaluation_phase6.py:19

↓ 3 callersFunction_semantic_scholar_request

向 Semantic Scholar API 发送请求（带主动限速 + Exponential Backoff 重试）双重限流保护： 1. 主动：请求前自动等待至 MIN_REQUEST_INTERVAL（无感知） 2. 被动：遇到 429 时 Exponent

src/mcp_servers/paper_search.py:133

↓ 3 callersMethodaddOption

(e,t=!1)

lib/tom-select/tom-select.complete.min.js:221

↓ 3 callersFunctionadd_common

(sp)

src/recorder/cli.py:135

↓ 3 callersFunctionall_workflows

()

src/runtime/workflows_registry.py:45

↓ 3 callersMethodblur

()

lib/tom-select/tom-select.complete.min.js:204

↓ 3 callersMethodbuild_from_store

从 KnowledgeGraphStore 全量构建索引。

src/knowledge/semantic_index.py:165

↓ 3 callersMethodclearCache

()

lib/tom-select/tom-select.complete.min.js:297

↓ 3 callersMethodclose

标记 area 完成。

src/recorder/refactor_recorder.py:253

↓ 3 callersFunctioncode_success_rate

代码执行结果与期望是否一致（1.0 = 一致）。

src/evaluation/metrics/capability.py:122

↓ 3 callersFunctiondetect_contamination

对比快照，返回被改动的受保护文件列表（空列表 = 干净）。

src/evaluation/isolation.py:86

↓ 3 callersFunctiondp

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctione

(e,t)

lib/tom-select/tom-select.complete.min.js:6

↓ 3 callersFunctionea

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionensure_output_dir

Ensure output directory exists.

skills/paper_reader/scripts/parse_pdf.py:42

↓ 3 callersMethodextract_page_text

提取指定页面的文本。 fix_columns=True 时按 bbox 列序重组（修双栏）。

src/core/pdf_parser.py:185

↓ 3 callersFunctionextraction_nonempty_rate

是否抽到了任何节点/边（1.0 = 非空）。与 schema_validity_rate（空时返回 1.0）互补：专门暴露「抽取静默失败、产出 0 节点」这种本应可见的问题。

src/evaluation/metrics/kg.py:151

↓ 3 callersFunctionf

(e,t,i)

lib/tom-select/tom-select.complete.min.js:31

↓ 3 callersFunctionf

(t,e,i,n,o,r)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersFunctionfigure_type_accuracy

图表类型分类是否正确。

src/evaluation/metrics/capability.py:175

↓ 3 callersFunctionfm

(t)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersMethodfrom_dict

(cls, d: dict | None)

src/evaluation/schema.py:129

↓ 3 callersFunctiongE

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersMethodgetLastActive

(e)

lib/tom-select/tom-select.complete.min.js:289

↓ 3 callersMethodgetValue

()

lib/tom-select/tom-select.complete.min.js:191

↓ 3 callersFunctionget_evidence_list

从 edge.properties 取证据列表（自动初始化为空 list）。

src/knowledge/evidence.py:82

↓ 3 callersMethodget_stats

获取图谱统计信息

src/knowledge/graph_store.py:508

↓ 3 callersFunctionget_workflow

(name: str)

src/runtime/workflows_registry.py:40

↓ 3 callersFunctiongm

(t,e)

lib/vis-9.1.2/vis-network.min.js:26

↓ 3 callersMethodgold_for

取某任务的 gold 行（dict）；无 gold 引用时返回 None。

src/evaluation/dataset.py:100

↓ 3 callersMethodhideInput

()

lib/tom-select/tom-select.complete.min.js:203

↓ 3 callersMethodis_scanned_pdf

检测 PDF 是否为扫描版（图片型，非可选择文字）【工程笔记】扫描版 PDF 的特征： - 每页几乎没有可提取的文字 - 每页有一张与页面同尺寸的大图检测方法：抽样前几页，如果文字量极少则判定为

src/core/pdf_parser.py:540

↓ 3 callersFunctionk

(e,t,i)

lib/tom-select/tom-select.complete.min.js:79

↓ 3 callersFunctionkg_node_f1

(归一化 label, node_type) 对的 F1。 extracted_nodes : [{"label", "node_type", ...}] gold_nodes : [{"label", "node_type"}]

src/evaluation/metrics/kg.py:48

↓ 3 callersFunctionkg_node_f1_semantic

节点 F1，但匹配走精确 → alias → embedding 三档。 gold schema（v1.0）： { "must_have": [{"label", "type", "aliases":[...], "evidence_section"}, .

src/evaluation/metrics/kg_semantic.py:156

↓ 3 callersFunctionkm

(t,e,i)

lib/vis-9.1.2/vis-network.min.js:26

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