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Functions892 in github.com/JasperSnoek/spearmint

↓ 1 callersMethodgenerate_stats_html
(self)
spearmint/spearmint/chooser/GPEIOptChooser.py:125
↓ 1 callersFunctionget_available_port
(portnum)
spearmint/spearmint/main.py:116
↓ 1 callersMethodget_broken
(self)
spearmint/spearmint/ExperimentGrid.py:105
↓ 1 callersMethodget_mirror
return ``pheno(self.mean - (geno(x) - self.mean))``. TODO: this implementation is yet experimental. Selectively mirrored samplin
spearmint/spearmint/chooser/cma.py:1763
↓ 1 callersMethodget_params
(self, index)
spearmint/spearmint/ExperimentGrid.py:108
↓ 1 callersMethodget_proc_id
(self, id)
spearmint/spearmint/ExperimentGrid.py:120
↓ 1 callersFunctiongr
(n,t,e,r,i,u)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersFunctiongrad_Matern32
(ls, x1, x2=None)
spearmint/spearmint/gp.py:115
↓ 1 callersFunctiongrad_Matern52
(ls, x1, x2=None)
spearmint/spearmint/gp.py:129
↓ 1 callersMethodgrad_optimize_ei_nopend
(self, cand, comp, vals, labels, compute_grad=True)
spearmint/spearmint/chooser/GPConstrainedEIChooser.py:692
↓ 1 callersMethodgrad_optimize_ei_pend
(self, cand, comp, pend, vals, labels, compute_grad=True)
spearmint/spearmint/chooser/GPConstrainedEIChooser.py:529
↓ 1 callersFunctiongrid_for
(job)
spearmint/spearmint/helpers.py:35
↓ 1 callersFunctionht
(e)
spearmint/spearmint/web/static/js/jquery-1.8.3.min.js:2
↓ 1 callersFunctioni4_bit_hi1
( n )
spearmint-lite/sobol_lib.py:3
↓ 1 callersFunctioni4_bit_hi1
( n )
spearmint/spearmint/sobol_lib.py:3
↓ 1 callersFunctioni4_sobol
( dim_num, seed )
spearmint-lite/sobol_lib.py:157
↓ 1 callersFunctioni4_sobol
( dim_num, seed )
spearmint/spearmint/sobol_lib.py:158
↓ 1 callersFunctioni4_sobol_generate
( m, n, skip )
spearmint/spearmint/sobol_lib.py:125
↓ 1 callersMethodindices
return the set of indices to be reevaluted for noise measurement, taking the ``lam_reeval`` best from the first ``2 * lam_reeval + 2``
spearmint/spearmint/chooser/cma.py:5660
↓ 1 callersMethodinitialize
(re-)set to the initial state
spearmint/spearmint/chooser/cma.py:1105
↓ 1 callersMethodinitialize
reset logger, overwrite original files, `modulo`: log only every modulo call
spearmint/spearmint/chooser/cma.py:3413
↓ 1 callersMethodinitialize
reset logger, overwrite original files, `modulo`: log only every modulo call
spearmint/spearmint/chooser/cma.py:4175
↓ 1 callersFunctionir
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:1
↓ 1 callersMethodis_proc_alive
(self, job_id, sgeid)
spearmint/spearmint/driver/sge.py:60
↓ 1 callersFunctionisprime
(n)
spearmint-lite/sobol_lib.py:573
↓ 1 callersFunctionisprime
(n)
spearmint/spearmint/sobol_lib.py:13930
↓ 1 callersMethodjob_broken
(expt_dir, id)
spearmint/spearmint/ExperimentGrid.py:58
↓ 1 callersMethodjob_complete
(expt_dir, id, value, duration)
spearmint/spearmint/ExperimentGrid.py:51
↓ 1 callersFunctionjob_runner
This fn runs in a new process. Now we are going to do a little bookkeeping and then spin off the actual job that does whatever it is we're tr
spearmint/spearmint/runner.py:21
↓ 1 callersMethodjob_running
(expt_dir, id)
spearmint/spearmint/ExperimentGrid.py:46
↓ 1 callersFunctionkr
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersFunctionla
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersMethodload
loads data from files written and return a data dictionary, *not* a prerequisite for using `plot()` or `disp()`. Argument `filenam
spearmint/spearmint/chooser/cma.py:3498
↓ 1 callersMethodload
loads data from files written and return a data dictionary, *not* a prerequisite for using `plot()` or `disp()`. Argument `filenam
spearmint/spearmint/chooser/cma.py:4263
↓ 1 callersFunctionload_status
()
spearmint/spearmint/web/static/js/spearmint.js:166
↓ 1 callersMethodlock
(self, filename)
spearmint-lite/Locker.py:42
↓ 1 callersMethodlock
(self, filename)
spearmint/spearmint/Locker.py:42
↓ 1 callersMethodlock_wait
(self, filename)
spearmint-lite/Locker.py:68
↓ 1 callersFunctionlu
(n,t,e)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersFunctionmain
()
spearmint-lite/spearmint-lite.py:54
↓ 1 callersFunctionmain
()
spearmint/spearmint/gp.py:294
↓ 1 callersFunctionmain
()
spearmint/spearmint/main.py:144
↓ 1 callersFunctionmain
to install and/or test from the command line use:: python cma.py [options | func dim sig0 [optkey optval][optkey optval]...] --test
spearmint/spearmint/chooser/cma.py:6761
↓ 1 callersFunctionmain
(job_id, params)
spearmint/examples/six_hump_camel/camel.py:11
↓ 1 callersFunctionmain
(job_id, params)
spearmint/examples/dejong/dejong.py:5
↓ 1 callersFunctionmain
(job_id, params)
spearmint/examples/rosenbrocks_valley/rosenbrock.py:12
↓ 1 callersFunctionmain_controller
(options, args)
spearmint-lite/spearmint-lite.py:88
↓ 1 callersMethodmultiplyC
multiply C with a scalar and update all related internal variables (dC, D,...)
spearmint/spearmint/chooser/cma.py:2467
↓ 1 callersFunctionnu
(n,t,e,r,i)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersMethodoptimize_hypers
(self, comp, vals)
spearmint/spearmint/chooser/GPEIChooser.py:348
↓ 1 callersMethodoptimize_hypers
(self, comp, vals, durs)
spearmint/spearmint/chooser/GPEIperSecChooser.py:683
↓ 1 callersMethodoptimize_hypers
(self, comp, vals)
spearmint/spearmint/chooser/GPEIOptChooser.py:708
↓ 1 callersFunctionou
(n,t)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersFunctionparse_args
()
spearmint/spearmint/main.py:66
↓ 1 callersFunctionpe
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:1
↓ 1 callersMethodplot
plot data from a `CMADataLogger` (using the files written by the logger). Arguments --------- `fig`
spearmint/spearmint/chooser/cma.py:3671
↓ 1 callersMethodplotdivers
helper function for `plot()` that plots all what is in the upper left subplot like fitness, sigma, etc. Arguments -------
spearmint/spearmint/chooser/cma.py:3891
↓ 1 callersMethodplotdivers
helper function for `plot()` that plots all what is in the upper left subplot like fitness, sigma, etc. Arguments -------
spearmint/spearmint/chooser/cma.py:4635
↓ 1 callersFunctionprocess_test
spearmint/spearmint/chooser/cma.py:6719
↓ 1 callersFunctionpt
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:1
↓ 1 callersFunctionpt
(e,t)
spearmint/spearmint/web/static/js/jquery-1.8.3.min.js:2
↓ 1 callersFunctionqe
(n,t,e,r)
spearmint/spearmint/web/static/js/d3.v3.min.js:1
↓ 1 callersFunctionredirect_output
Redirect stdout and stderr to a file.
spearmint/spearmint/helpers.py:22
↓ 1 callersMethodreeval
store two fitness lists, `fit` and ``fitre`` reevaluating some solutions in `X`. ``self.evaluations`` evaluations are done for each
spearmint/spearmint/chooser/cma.py:5607
↓ 1 callersMethodregister
register a `CMAEvolutionStrategy` instance for logging, ``append=True`` appends to previous data logged under the same name, by defa
spearmint/spearmint/chooser/cma.py:4159
↓ 1 callersMethodresult
return ``(xbest, f(xbest), evaluations_xbest, evaluations, iterations, pheno(xmean), effective_stds)``
spearmint/spearmint/chooser/cma.py:2329
↓ 1 callersMethodrosen
Rosenbrock test objective function
spearmint/spearmint/chooser/cma.py:6616
↓ 1 callersFunctionrr
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:1
↓ 1 callersFunctionrun_matlab_job
Run it as a Matlab function.
spearmint/spearmint/runner.py:90
↓ 1 callersFunctionrun_mcr_job
Run a compiled Matlab job.
spearmint/spearmint/runner.py:189
↓ 1 callersFunctionrun_python_job
Run a Python function.
spearmint/spearmint/runner.py:105
↓ 1 callersFunctionrun_torch_job
Run a torch based job.
spearmint/spearmint/runner.py:140
↓ 1 callersFunctionsafe_delete
(filename)
spearmint-lite/Locker.py:26
↓ 1 callersFunctionsafe_delete
(filename)
spearmint/spearmint/Locker.py:26
↓ 1 callersMethodsample_hypers
(self, comp, vals)
spearmint/spearmint/chooser/GPEIChooser.py:268
↓ 1 callersMethodsave
save to file
spearmint/spearmint/chooser/cma.py:5835
↓ 1 callersMethodset
Compute strategy parameters as a function of dimension and population size
spearmint/spearmint/chooser/cma.py:3013
↓ 1 callersMethodset_broken
(self, id)
spearmint-lite/ExperimentGrid.py:155
↓ 1 callersMethodset_broken
(self, id)
spearmint/spearmint/ExperimentGrid.py:160
↓ 1 callersMethodset_candidate
(self, id)
spearmint/spearmint/ExperimentGrid.py:141
↓ 1 callersMethodset_chooser
(self, chooser_module, chooser)
spearmint/spearmint/web/app.py:17
↓ 1 callersMethodset_complete
(self, id, value, duration)
spearmint-lite/ExperimentGrid.py:149
↓ 1 callersMethodset_complete
(self, id, value, duration)
spearmint/spearmint/ExperimentGrid.py:154
↓ 1 callersMethodset_running
(self, id)
spearmint-lite/ExperimentGrid.py:145
↓ 1 callersMethodset_running
(self, id)
spearmint/spearmint/ExperimentGrid.py:150
↓ 1 callersMethodset_submitted
(self, id, proc_id)
spearmint/spearmint/ExperimentGrid.py:145
↓ 1 callersMethodsround
return stochastic round: floor(nb) + (rand()<remainder(nb))
spearmint/spearmint/chooser/cma.py:5976
↓ 1 callersFunctionstart_web_view
Start the web view in a separate process.
spearmint/spearmint/main.py:126
↓ 1 callersFunctionsu
(n)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
↓ 1 callersMethodsubmit_job
(self, job)
spearmint/spearmint/driver/sge.py:29
↓ 1 callersMethodtell
abstract method, AKA "update", prepare for next iteration
spearmint/spearmint/chooser/cma.py:1114
↓ 1 callersMethodtell
update
spearmint/spearmint/chooser/cma.py:4895
↓ 1 callersMethodto_unit
(self, v)
spearmint-lite/ExperimentGrid.py:248
↓ 1 callersMethodtreat
adapt self.evaluations depending on the current measurement value and return ``sigma_fac in (1.0, self.alphasigma)``
spearmint/spearmint/chooser/cma.py:5595
↓ 1 callersMethodtruncate
(self, max_len, min_iter)
spearmint/spearmint/chooser/cma.py:406
↓ 1 callersMethodunit_to_list
(self, u)
spearmint-lite/ExperimentGrid.py:276
↓ 1 callersMethodupdateBD
update internal variables for sampling the distribution with the current covariance matrix C. This method is O(N^3), if C is not diagonal.
spearmint/spearmint/chooser/cma.py:2378
↓ 1 callersMethodupdate_exponential
exponential update of C that guarantees positive definiteness, that is, instead of the assignment ``C = C + eta * Z``, C gets C**.5
spearmint/spearmint/chooser/cma.py:2473
↓ 1 callersMethodupdate_measure
updated noise level measure using two fitness lists ``self.fit`` and ``self.fitre``, return ``self.noiseS, all_individual_measures``.
spearmint/spearmint/chooser/cma.py:5634
↓ 1 callersFunctionuu
(n,t,e)
spearmint/spearmint/web/static/js/d3.v3.min.js:2
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