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Method __init__

tasks/AutoMolecule3D/code/experiment.py:52–111  ·  view source on GitHub ↗
(
        self,
        lmax=2,
        vecnorm_type='none',
        trainable_vecnorm=False,
        num_heads=8,
        num_layers=9,
        hidden_channels=256,
        num_rbf=32,
        rbf_type="expnorm",
        trainable_rbf=False,
        activation="silu",
        attn_activation="silu",
        max_z=100,
        cutoff=5.0,
        max_num_neighbors=32,
        vertex_type="Edge",
    )

Source from the content-addressed store, hash-verified

50class ViSNetBlock(nn.Module):
51
52 def __init__(
53 self,
54 lmax=2,
55 vecnorm_type='none',
56 trainable_vecnorm=False,
57 num_heads=8,
58 num_layers=9,
59 hidden_channels=256,
60 num_rbf=32,
61 rbf_type="expnorm",
62 trainable_rbf=False,
63 activation="silu",
64 attn_activation="silu",
65 max_z=100,
66 cutoff=5.0,
67 max_num_neighbors=32,
68 vertex_type="Edge",
69 ):
70 super(ViSNetBlock, self).__init__()
71 self.lmax = lmax
72 self.vecnorm_type = vecnorm_type
73 self.trainable_vecnorm = trainable_vecnorm
74 self.num_heads = num_heads
75 self.num_layers = num_layers
76 self.hidden_channels = hidden_channels
77 self.num_rbf = num_rbf
78 self.rbf_type = rbf_type
79 self.trainable_rbf = trainable_rbf
80 self.activation = activation
81 self.attn_activation = attn_activation
82 self.max_z = max_z
83 self.cutoff = cutoff
84 self.max_num_neighbors = max_num_neighbors
85
86 self.embedding = nn.Embedding(max_z, hidden_channels)
87 self.distance = Distance(cutoff, max_num_neighbors=max_num_neighbors, loop=True)
88 self.sphere = Sphere(l=lmax)
89 self.distance_expansion = rbf_class_mapping[rbf_type](cutoff, num_rbf, trainable_rbf)
90 self.neighbor_embedding = NeighborEmbedding(hidden_channels, num_rbf, cutoff, max_z).jittable()
91 self.edge_embedding = EdgeEmbedding(num_rbf, hidden_channels).jittable()
92
93 self.vis_mp_layers = nn.ModuleList()
94 vis_mp_kwargs = dict(
95 num_heads=num_heads,
96 hidden_channels=hidden_channels,
97 activation=activation,
98 attn_activation=attn_activation,
99 cutoff=cutoff,
100 vecnorm_type=vecnorm_type,
101 trainable_vecnorm=trainable_vecnorm
102 )
103 vis_mp_class = VIS_MP_MAP.get(vertex_type, ViS_MP)
104 for _ in range(num_layers - 1):
105 layer = vis_mp_class(last_layer=False, **vis_mp_kwargs).jittable()
106 self.vis_mp_layers.append(layer)
107 self.vis_mp_layers.append(vis_mp_class(last_layer=True, **vis_mp_kwargs).jittable())
108
109 self.out_norm = nn.LayerNorm(hidden_channels)

Callers

nothing calls this directly

Calls 8

reset_parametersMethod · 0.95
DistanceClass · 0.90
SphereClass · 0.90
NeighborEmbeddingClass · 0.90
EdgeEmbeddingClass · 0.90
VecLayerNormClass · 0.90
__init__Method · 0.45
getMethod · 0.45

Tested by

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