Functions — github.com/Illumina/paragraph

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Functions1,164 in github.com/Illumina/paragraph

⨍ Functions 1,164◇ Types & classes 218

src/c++/include/idxdepth/Parameters.hh:51

src/c++/include/paragraph/Parameters.hh:105

FunctionthrowLogicError

external/jsoncpp/jsoncpp.cpp:2681

src/c++/lib/genotyping/PopulationStatistics.cpp:70

src/c++/include/common/Read.hh:142

src/c++/include/variant/Variant.hh:146

external/jsoncpp/jsoncpp.cpp:4723

Methodunlock_guard

src/c++/include/common/Threads.hh:99

FunctionunpackKmer

src/c++/include/oligo/Nucleotides.hh:388

src/c++/include/common/Threads.hh:269

MethodunsafeExecute

* \brief executes and allows the exception to escape */

src/c++/include/common/Threads.hh:323

src/c++/lib/common/KlibGlobal.cpp:41

MethodupdateAlignment

src/c++/lib/grm/KmerAligner.cpp:424

MethodupdateAlignment

src/c++/lib/grm/KlibAligner.cpp:310

Functionupdate_vcf_from_grmpy

(inVcfFilename, grmpyOutput, outVcfFilename, sample_names=None)

src/python/lib/grm/vcfgraph/vcfupdate.py:92

MethodusagePrefix

src/c++/main/paragraph.cpp:77

MethodusageSuffix

src/c++/include/common/Program.hh:81

src/python/lib/grm/vcfgraph/graphContainer.py:178

MethodwaitAllReady

src/c++/include/common/Threads.hh:385

MethodwriteArrayValue

external/jsoncpp/jsoncpp.cpp:4628

MethodwriteCommentAfterValueOnSameLine

external/jsoncpp/jsoncpp.cpp:4748

MethodwriteCommentBeforeValue

external/jsoncpp/jsoncpp.cpp:4728

MethodwriteIndent

external/jsoncpp/jsoncpp.cpp:4705

MethodwriteValue

external/jsoncpp/jsoncpp.cpp:4498

MethodwriteWithIndent

external/jsoncpp/jsoncpp.cpp:4716

Method~AbstractGaussian

src/c++/include/statistics/AbstractGaussian.hh:54

Method~Alignment

src/c++/lib/common/Alignment.cpp:45

Method~AlignmentResult

src/c++/include/common/Alignment.hh:144

Method~AlignmentTimer

src/c++/test/test_align.cpp:324

Method~BamReaderImpl

src/c++/lib/common/BamReader.cpp:114

Method~BasicThreadPool

* \brief Tells all threads to terminate and releases them. */

src/c++/include/common/Threads.hh:193

Method~CZString

external/jsoncpp/jsoncpp.cpp:2753

Method~CharReaderBuilder

external/jsoncpp/jsoncpp.cpp:2163

Method~CommentInfo

external/jsoncpp/jsoncpp.cpp:2697

Method~Executor

src/c++/include/common/Threads.hh:120

external/jsoncpp/jsoncpp.cpp:5279

Function~FastWriter

external/jsoncpp/json/json.h:1938

Method~FastaFile

src/c++/lib/common/Fasta.cpp:393

Method~FastaFileImpl

src/c++/lib/common/Fasta.cpp:383

Method~Fragment

src/c++/include/common/Fragment.hh:42

Method~GTestEnvironment

src/c++/test-blackbox/common.hh:78

Method~GTestEnvironment

src/c++/test/common.hh:87

Method~Genotype

src/c++/include/genotyping/Genotype.hh:53

Method~KlibAlignment

src/c++/lib/common/Klib.cpp:47

Method~KlibAlignmentImpl

src/c++/lib/common/KlibImpl.hh:120

Method~KmerAligner

src/c++/lib/grm/KmerAligner.cpp:546

Method~MMappedFastaFile

src/c++/lib/common/Fasta.cpp:196

src/c++/include/common/Program.hh:62

Method~ReadFilter

src/c++/include/paragraph/ReadFilter.hh:44

Method~ReadPileupInfo

src/c++/include/common/ReadPileup.hh:33

Method~ReadReader

src/c++/include/common/ReadReader.hh:33

Method~Reference

src/c++/include/common/Reference.hh:29

Method~ScopeEndCall

src/c++/include/common/Threads.hh:68

Method~ScopeEndCallBase

src/c++/include/common/Threads.hh:50

Method~StreamWriter

external/jsoncpp/jsoncpp.cpp:5276

Method~StreamWriterBuilder

external/jsoncpp/jsoncpp.cpp:5285

Function~StyledStreamWriter

external/jsoncpp/json/json.h:2068

Function~StyledWriter

external/jsoncpp/json/json.h:1997

Method~ValidationAligner

src/c++/include/grm/ValidationAligner.hh:51

external/jsoncpp/jsoncpp.cpp:2965

src/c++/include/variant/Variant.hh:90

Class Writer //////////////////////////////////////////////////////////////////

external/jsoncpp/jsoncpp.cpp:4475

Method~cerr_redirect

src/c++/test/test_error.cpp:49

Method~unlock_guard

src/c++/include/common/Threads.hh:107

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