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Functions854 in github.com/Illumina/hap.py

⨍ Functions 854◇ Types & classes 237

Method~Alignment

src/c++/lib/align/Alignment.cpp:52

Method~AlignmentResult

src/c++/include/Alignment.hh:148

Method~AlignmentTimer

src/c++/test/test_align.cpp:318

Method~AlleleMatcher

src/c++/lib/scmp/AlleleMatcher.cpp:51

Method~BatchAllocator

external/jsoncpp/jsoncpp.cpp:1088

Method~BlockAlleleCompare

src/c++/lib/scmp/BlockAlleleCompare.cpp:99

Method~BlockQuantify

src/c++/lib/quantify/BlockQuantify.cpp:116

Method~BlockQuantifyImpl

src/c++/lib/quantify/BlockQuantify.cpp:89

Method~CZString

external/jsoncpp/jsoncpp.cpp:1679

Method~CommentInfo

external/jsoncpp/jsoncpp.cpp:1637

Method~DiploidCompare

src/c++/lib/diploidgraphs/DiploidCompare.cpp:99

Method~DiploidReference

src/c++/lib/diploidgraphs/DiploidReference.cpp:126

Method~DistanceBasedMatcher

src/c++/lib/scmp/DistanceBasedMatcher.cpp:53

Function~FastWriter

external/jsoncpp/json/json.h:1747

Method~FastaFile

src/c++/lib/tools/Fasta.cpp:391

Method~FastaFileImpl

src/c++/lib/tools/Fasta.cpp:376

Method~GraphReference

src/c++/lib/diploidgraphs/GraphReference.cpp:110

Method~HapSetMatcher

src/c++/lib/scmp/HapSetMatcher.cpp:63

Method~HaploCompare

src/c++/lib/diploidgraphs/HaploCompare.cpp:105

Method~Haplotype

src/c++/lib/diploidgraphs/Haplotype.cpp:115

Method~HaplotypeData

src/c++/lib/diploidgraphs/Haplotype.cpp:95

Method~IntervalBuffer

src/c++/lib/tools/IntervalBuffer.cpp:72

Method~IntervalList

src/c++/include/helpers/IntervalList.hh:98

Method~KlibAlignment

src/c++/lib/align/Klib.cpp:48

Method~KlibAlignmentImpl

src/c++/lib/align/KlibImpl.hh:116

Method~MMappedFastaFile

src/c++/lib/tools/Fasta.cpp:199

Method~QuantifyRegions

src/c++/lib/quantify/QuantifyRegions.cpp:76

src/c++/lib/tools/Roc.cpp:144

Function~StyledStreamWriter

external/jsoncpp/json/json.h:1859

Function~StyledWriter

external/jsoncpp/json/json.h:1798

src/c++/lib/tools/Table.cpp:126

external/jsoncpp/jsoncpp.cpp:1947

Method~VariantAlleleNormalizer

src/c++/lib/variant/VariantAlleleNormalizer.cpp:84

Method~VariantAlleleRemover

src/c++/include/variant/VariantAlleleRemover.hh:55

Method~VariantAlleleSplitter

src/c++/lib/variant/VariantAlleleSplitter.cpp:74

Method~VariantAlleleUniq

src/c++/lib/variant/VariantAlleleUniq.cpp:65

Method~VariantCallsOnly

src/c++/lib/variant/VariantCallsOnly.cpp:83

Method~VariantHomrefSplitter

src/c++/lib/variant/VariantHomrefSplitter.cpp:86

Method~VariantInjectorStep

src/c++/include/variant/VariantTee.hh:60

Method~VariantInput

src/c++/lib/variant/VariantInput.cpp:210

Method~VariantLeftPadding

src/c++/lib/variant/VariantLeftPadding.cpp:89

Method~VariantLocationAggregator

src/c++/lib/variant/VariantLocationAggregator.cpp:67

Method~VariantPrimitiveSplitter

src/c++/lib/variant/VariantPrimitiveSplitter.cpp:96

Method~VariantProcessor

src/c++/lib/variant/VariantProcessor.cpp:240

Method~VariantReader

src/c++/lib/variant/VariantReader.cpp:73

Method~VariantReaderImpl

src/c++/lib/variant/VariantImpl.hh:91

Method~VariantStatistics

src/c++/lib/variant/VariantStatistics.cpp:381

Method~VariantStatisticsImpl

src/c++/lib/variant/VariantStatistics.cpp:161

Method~VariantTee

src/c++/include/variant/VariantTee.hh:126

Method~VariantWriter

src/c++/lib/variant/VariantWriter.cpp:64

Method~VariantWriterImpl

src/c++/lib/variant/VariantImpl.hh:158

Class Writer //////////////////////////////////////////////////////////////////

external/jsoncpp/jsoncpp.cpp:3224

Method~interval

src/c++/include/helpers/IntervalList.hh:56

Method~value_interval

src/c++/include/helpers/LocationInfo.hh:100

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