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Functions854 in github.com/Illumina/hap.py

⨍ Functions 854◇ Types & classes 237

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_error.cpp:44

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_intervalbuffer.cpp:49

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_graphreference.cpp:164

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_variantstatistics.cpp:48

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_hapsetmatcher.cpp:57

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_haplotypes.cpp:51

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_format_extraction.cpp:50

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_variants.cpp:47

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_fasta.cpp:46

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_stringutil.cpp:41

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_refvar.cpp:58

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_bcfhelpers.cpp:55

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_locationinfo.cpp:49

FunctionBOOST_AUTO_TEST_CASE

src/c++/test/test_intervallist.cpp:114

MethodBatchAllocator

external/jsoncpp/jsoncpp.cpp:1076

MethodBlockAlleleCompare

* hdr must be destroyed externally, the reason it's not const is * that htslib doesn't do const mostly. * * @param hdr a bcf header

src/c++/lib/scmp/BlockAlleleCompare.cpp:71

MethodBlockAlleleCompare

src/c++/include/BlockAlleleCompare.hh:68

MethodBlockQuantify

src/c++/lib/quantify/BlockQuantify.cpp:97

MethodBlockQuantify

src/c++/include/BlockQuantify.hh:79

external/jsoncpp/jsoncpp.cpp:1665

src/c++/include/Variant.hh:75

src/c++/lib/variant/VariantAlleleSplitter.cpp:137

MethodCommentInfo

external/jsoncpp/jsoncpp.cpp:1635

MethodDiploidCompare

src/c++/lib/diploidgraphs/DiploidCompare.cpp:89

MethodDiploidCompareImpl

src/c++/lib/diploidgraphs/DiploidCompare.cpp:58

MethodDiploidReference

src/c++/lib/diploidgraphs/DiploidReference.cpp:103

MethodDiploidReferenceImpl

src/c++/lib/diploidgraphs/DiploidReference.cpp:84

MethodDiploidReferenceTester

src/c++/test/test_diploidreference.cpp:60

MethodDistanceBasedMatcher

src/c++/lib/scmp/DistanceBasedMatcher.cpp:46

MethodFastWriter

external/jsoncpp/jsoncpp.cpp:3229

MethodFastaFile

src/c++/lib/tools/Fasta.cpp:382

MethodFastaFileImpl

src/c++/lib/tools/Fasta.cpp:369

external/jsoncpp/jsoncpp.cpp:211

FunctionFlagsForFile

( filename, **kwargs )

.ycm_extra_conf.py:149

MethodGA4GHQuantify

src/c++/lib/quantify/GA4GHQuantify.cpp:46

MethodGraphReference

src/c++/lib/diploidgraphs/GraphReference.cpp:92

MethodGraphReferenceImpl

src/c++/lib/diploidgraphs/GraphReference.cpp:75

MethodGraphReferenceTester

src/c++/test/test_graphreference.cpp:60

MethodHapSetMatcher

src/c++/lib/scmp/HapSetMatcher.cpp:50

MethodHaploCompare

src/c++/lib/diploidgraphs/HaploCompare.cpp:100

MethodHaploCompareImpl

src/c++/lib/diploidgraphs/HaploCompare.cpp:88

MethodHaplotype

src/c++/lib/diploidgraphs/Haplotype.cpp:106

MethodHaplotypeData

src/c++/lib/diploidgraphs/Haplotype.cpp:66

MethodHaplotypeDiff

src/c++/include/HaploCompare.hh:54

MethodIntervalBuffer

tracks intervals over a number of lanes */

src/c++/lib/tools/IntervalBuffer.cpp:67

MethodIntervalBufferImpl

src/c++/lib/tools/IntervalBuffer.cpp:55

MethodIteratorState

external/jsoncpp/json/json.h:1012

MethodKlibAlignment

src/c++/lib/align/Klib.cpp:41

MethodKlibAlignmentImpl

src/c++/lib/align/KlibImpl.hh:113

src/c++/include/helpers/Roc.hh:110

MethodLocationInfo

src/c++/include/helpers/LocationInfo.hh:204

MethodMMappedFastaFile

src/c++/lib/tools/Fasta.cpp:74

MethodOptionalValue

src/c++/lib/tools/Table.cpp:52

external/jsoncpp/jsoncpp.cpp:2916

MethodPathArgument

external/jsoncpp/jsoncpp.cpp:2902

MethodQuantifyRegions

src/c++/lib/quantify/QuantifyRegions.cpp:72

MethodQuantifyRegionsImpl

src/c++/lib/quantify/QuantifyRegions.cpp:55

MethodROCOutput

* ROC output class * * @param r the set of ROCs to write * @param _qq_field the name of the qual field (this gets written i

src/c++/include/helpers/RocOutput.hh:58

external/jsoncpp/jsoncpp.cpp:256

MethodReferenceEdge

src/c++/include/GraphReference.hh:172

MethodReferenceNode

src/c++/include/GraphReference.hh:140

src/c++/lib/tools/Roc.cpp:143

MethodStyledStreamWriter

external/jsoncpp/jsoncpp.cpp:3519

MethodStyledWriter

external/jsoncpp/jsoncpp.cpp:3297

src/c++/lib/tools/Table.cpp:123

! \internal Default constructor initialization must be equivalent to: * memset( this, 0, sizeof(Value) ) * This optimization is used in ValueInterna

external/jsoncpp/jsoncpp.cpp:1727

MethodValueConstIterator

external/jsoncpp/jsoncpp.cpp:1404

MethodValueIterator

external/jsoncpp/jsoncpp.cpp:1442

MethodValueIteratorBase

external/jsoncpp/jsoncpp.cpp:1215

MethodVariantAlleleNormalizer

src/c++/lib/variant/VariantAlleleNormalizer.cpp:74

MethodVariantAlleleNormalizerImpl

src/c++/lib/variant/VariantAlleleNormalizer.cpp:49

MethodVariantAlleleRemover

src/c++/include/variant/VariantAlleleRemover.hh:54

MethodVariantAlleleSplitter

src/c++/lib/variant/VariantAlleleSplitter.cpp:64

MethodVariantAlleleSplitterImpl

src/c++/lib/variant/VariantAlleleSplitter.cpp:51

MethodVariantAlleleUniq

src/c++/lib/variant/VariantAlleleUniq.cpp:56

MethodVariantAlleleUniqImpl

src/c++/lib/variant/VariantAlleleUniq.cpp:49

MethodVariantCallsOnly

src/c++/lib/variant/VariantCallsOnly.cpp:73

MethodVariantCallsOnlyImpl

src/c++/lib/variant/VariantCallsOnly.cpp:53

MethodVariantHomrefSplitter

src/c++/lib/variant/VariantHomrefSplitter.cpp:76

MethodVariantHomrefSplitterImpl

src/c++/lib/variant/VariantHomrefSplitter.cpp:59

MethodVariantInjectorStep

src/c++/include/variant/VariantTee.hh:59

MethodVariantInput

src/c++/lib/variant/VariantInput.cpp:77

MethodVariantInput

prevent copy construction and assignment

src/c++/include/VariantInput.hh:73

MethodVariantLeftPadding

src/c++/lib/variant/VariantLeftPadding.cpp:79

MethodVariantLeftPaddingImpl

src/c++/lib/variant/VariantLeftPadding.cpp:59

MethodVariantLocationAggregator

src/c++/lib/variant/VariantLocationAggregator.cpp:57

MethodVariantLocationAggregatorImpl

src/c++/lib/variant/VariantLocationAggregator.cpp:49

MethodVariantPrimitiveSplitter

src/c++/lib/variant/VariantPrimitiveSplitter.cpp:87

MethodVariantPrimitiveSplitterImpl

src/c++/lib/variant/VariantPrimitiveSplitter.cpp:63

MethodVariantProcessor

src/c++/lib/variant/VariantProcessor.cpp:230

MethodVariantProcessorImpl

src/c++/lib/variant/VariantProcessor.cpp:215

MethodVariantReader

src/c++/lib/variant/VariantReader.cpp:46

MethodVariantReaderImpl

src/c++/lib/variant/VariantImpl.hh:76

MethodVariantStatistics

src/c++/lib/variant/VariantStatistics.cpp:371

MethodVariantStatistics

src/c++/include/variant/VariantStatistics.hh:57

MethodVariantStatisticsImpl

src/c++/lib/variant/VariantStatistics.cpp:150

MethodVariantTee

src/c++/include/variant/VariantTee.hh:125

MethodVariantWriter

src/c++/lib/variant/VariantWriter.cpp:50

MethodVariantWriterImpl

src/c++/lib/variant/VariantImpl.hh:129

src/c++/lib/variant/Variant.cpp:202

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