MCPcopy Index your code
hub / github.com/HXY-99/brats

github.com/HXY-99/brats @main

Chat with this repo
repository ↗ · DeepWiki ↗ · + Follow
147 symbols 328 edges 14 files 22 documented · 15%
What it actually does AI analysis from the code graph — generated when you open this
loading…
README

Brain Tumor Segmentation Based on the Fusion of Deep Semantics and Edge Information in Multimodal MRI


The semantic segmentation part consists of the improved Swin Transformer, and the edge detection part consists of convolutional layers and ESAB modules.The fusion part uses the method of graph convolution to fuse semantic features and edge features.

DataSets


The dataset used in this paper is BraTS2018,2019 and 2020. The datasets can be found in kaggle, using the training set part.

Requirement


This article is implemented by Pytorch.

  1. PyTorch 1.9.0
  2. Some other libraries

Cite


@article{ZHU2023376,

title = {Brain tumor segmentation based on the fusion of deep semantics and edge information in multimodal MRI},

journal = {Information Fusion},

volume = {91},

pages = {376-387},

year = {2023},

issn = {1566-2535},

doi = {https://doi.org/10.1016/j.inffus.2022.10.022},

url = {https://www.sciencedirect.com/science/article/pii/S1566253522001981},

author = {Zhiqin Zhu and Xianyu He and Guanqiu Qi and Yuanyuan Li and Baisen Cong and Yu Liu},

}

Core symbols most depended-on inside this repo

Dice
called by 13
model/criterions.py
map_
called by 10
utils.py
sset
called by 8
utils.py
one_hot
called by 7
utils.py
simplex
called by 3
utils.py
window_partition
called by 3
model/swintransformer.py
uniq
called by 2
utils.py
intersection
called by 2
utils.py

Shape

Function 62
Method 59
Class 26

Languages

Python100%

Modules by API surface

utils.py37 symbols
model/swintransformer.py34 symbols
model/criterions.py12 symbols
model/edge.py11 symbols
model/graph.py9 symbols
model/model.py6 symbols
model/fusion.py6 symbols
model/ShiftedPatch.py6 symbols
metrics.py6 symbols
config.py5 symbols
model/drop.py4 symbols
loss.py4 symbols

For agents

$ claude mcp add brats \
  -- python -m otcore.mcp_server <graph>

⬇ download graph artifact