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Functions951 in github.com/HKUDS/AI-Researcher

↓ 1 callersFunctioncomplete_workflow
Complete the workflow to a more detailed workflow graph.
research_agent/inno/workflow/utils.py:25
↓ 1 callersMethodcompose_section
(self, agent_dir: str, model_dir: str, benchmark_path: str, target_paper: str)
paper_agent/methodology_composing_using_template.py:209
↓ 1 callersMethodcompose_section
(self, benchmark_path: str, target_paper: str)
paper_agent/introduction_composing.py:187
↓ 1 callersMethodcompose_section
(self, target_paper: str)
paper_agent/conclusion_composing.py:137
↓ 1 callersMethodcompose_section
(self, agent_dir: str, proj_dir: str, benchmark_path: str, target_paper: str)
paper_agent/experiments_composing.py:269
↓ 1 callersMethodcompose_section
(self, target_paper: str)
paper_agent/abstract_composing.py:146
↓ 1 callersMethodcompose_section
(self, agent_dir: str, papers_dir: str, benchmark_path: str, target_paper: str)
paper_agent/related_work_composing_using_template.py:165
↓ 1 callersMethodcompute_attention
(self, embeddings)
examples/dccf/project/model/intent_module.py:32
↓ 1 callersMethodcompute_codebook_metrics
Analyze codebook utilization and diversity
examples/rotation_vq/project/testing/evaluator.py:43
↓ 1 callersMethodcompute_entropy_rate
Compute entropy rate of quantized representations. Returns: float: Entropy rate in bits
examples/fsq/project/model/quantization.py:129
↓ 1 callersMethodcompute_graph_structure
(self, x, adj_matrix=None)
examples/gnn_nodeformer/project/model/enhanced_model.py:120
↓ 1 callersMethodcompute_graph_structure
Compute the graph structure using kernelized Gumbel-Softmax. Args: x (torch.Tensor): Node feature matrix adj_
examples/gnn_nodeformer/project/model/graph_model.py:69
↓ 1 callersMethodcompute_perplexity
Compute perplexity to monitor codebook usage
examples/rotation_vq/project/model/vqvae.py:188
↓ 1 callersMethodcompute_reconstruction_metrics
Compute reconstruction quality metrics
examples/rotation_vq/project/testing/evaluator.py:18
↓ 1 callersMethodcompute_rotation_matrix
Compute rotation matrix using Householder transformation that aligns encoder output with codebook vector.
examples/rotation_vq/project/model/vqvae.py:64
↓ 1 callersMethodcompute_sample_quality_metrics
Compute metrics for generated samples
examples/rotation_vq/project/testing/evaluator.py:76
↓ 1 callersMethodconcave_function
Smooth concave function with controlled scaling
examples/gnn_difformer/project/model/improved_diffusion.py:51
↓ 1 callersFunctionconvert_fn_messages_to_non_fn_messages
Convert function calling messages back to non-function calling messages.
research_agent/inno/fn_call_converter.py:815
↓ 1 callersMethodconvert_local
(self, path: str, **kwargs: Any)
research_agent/inno/environment/mdconvert.py:864
↓ 1 callersFunctionconvert_non_fncall_messages_to_fncall_messages
Convert non-function calling messages back to function calling messages.
research_agent/inno/fn_call_converter.py:575
↓ 1 callersMethodconvert_stream
(self, stream: Any, **kwargs: Any)
research_agent/inno/environment/markdown_browser/mdconvert.py:872
↓ 1 callersFunctionconvert_to_matrix
Convert interaction dictionary to sparse matrix
examples/hgcl/project/prepare_data.py:7
↓ 1 callersFunctionconvert_tool_call_to_string
Convert tool call to content in string format.
research_agent/inno/fn_call_converter.py:250
↓ 1 callersMethodconvert_url
(self, url: str, **kwargs: Any)
research_agent/inno/environment/mdconvert.py:911
↓ 1 callersMethodconvert_url
(self, url: str, **kwargs: Any)
research_agent/inno/environment/markdown_browser/mdconvert.py:905
↓ 1 callersFunctioncosine_temperature_scheduler
Cosine annealing temperature scheduler.
examples/gnn_nodeformer/project/experiments/run_enhanced_experiments.py:24
↓ 1 callersFunctioncount_tokens
(text: str, model: str = "gpt-4")
benchmark_collection/utils/openai_utils.py:12
↓ 1 callersMethodcreate_pull_request
Create a Pull Request Args: repo: The full name of the repository (e.g., 'owner/repo') title: The PR
research_agent/inno/tools/github_client.py:38
↓ 1 callersFunctioncreate_ui
()
web_ai_researcher.py:921
↓ 1 callersFunctiondelete_env_var
删除环境变量
web_ai_researcher.py:703
↓ 1 callersMethoddetailize_subsection
(self, structure, current_text, content)
paper_agent/conclusion_composing.py:60
↓ 1 callersMethoddetailize_subsection
(self, structure, current_text, content)
paper_agent/abstract_composing.py:65
↓ 1 callersMethoddetect_cycle_util
(self, v, visited, rec_stack)
research_agent/inno/workflow/flowgraph.py:67
↓ 1 callersFunctiondownload_arxiv_by_title
download arxiv paper by title Args: title (str): title of the paper
research_agent/inno/tools/inno_tools/arxiv.py:8
↓ 1 callersFunctiondownload_arxiv_source
download arxiv paper source file Args: arxiv_url: arxiv paper url, e.g. 'http://arxiv.org/abs/2006.11239v2' local_root:
research_agent/inno/tools/arxiv_source.py:97
↓ 1 callersFunctiondownload_arxiv_source
download arxiv paper source by arxiv url Args: arxiv_url (str): arXiv paper url, e.g. 'http://arxiv.org/abs/2006.11239v2'
research_agent/inno/tools/inno_tools/arxiv.py:59
↓ 1 callersFunctiondownload_papers
Download PDFs for all papers
benchmark_collection/0_crawl_paper.py:304
↓ 1 callersFunctiondownload_pdf
Download PDF from URL with error handling
benchmark_collection/0_crawl_paper.py:280
↓ 1 callersFunctionedge_regularization_loss
Compute edge-level regularization loss. Args: graph_structure (torch.Tensor): Learned graph structure adj_matrix (torch.Tenso
examples/gnn_nodeformer/project/training/loss.py:24
↓ 1 callersMethodentropy_regularization
(self, quantized_z)
examples/fsq/project/run_regularized_training.py:23
↓ 1 callersFunctionextract_json_from_output
(output_text: str)
research_agent/run_infer_idea.py:32
↓ 1 callersFunctionextract_json_from_output
(output_text: str)
research_agent/run_infer_plan.py:31
↓ 1 callersFunctionextract_model_name
Extract model name from paper content
benchmark_collection/1_create_inno_graph.py:260
↓ 1 callersFunctionextract_representations
Extract node representations at different layers
examples/gnn_difformer/project/run_visualization_study.py:19
↓ 1 callersFunctionextract_tex_content
从tar.gz文件中提取所有.tex文件的内容 参数: tar_path: tar.gz文件路径 返回: str: 所有.tex文件内容的拼接,格式为 filename + content
research_agent/inno/tools/arxiv_source.py:57
↓ 1 callersFunctionextract_tex_content
extract all tex file content from tar.gz file Args: tar_path (str): tar.gz file path Returns: str: all tex file
research_agent/inno/tools/inno_tools/arxiv.py:99
↓ 1 callersFunctionfilter_ignores
(st, regexes_to_ignore)
benchmark/process/dataset_candidate/reasoning/math_reasoning/get_score.py:34
↓ 1 callersMethodfilter_paths
Filter out shorter paths that can be generated by repeating substrings in longer paths. For example, if there is a path S -> A -> B -
research_agent/inno/workflow/flowgraph.py:192
↓ 1 callersFunctionfilter_self_references
Filter out self-references and return statistics
benchmark_collection/1_create_inno_graph.py:317
↓ 1 callersMethodfinal_writing_checklist
(self, methodology_text: str)
paper_agent/methodology_composing_using_template.py:165
↓ 1 callersMethodfinal_writing_checklist
(self, introduction_text: str)
paper_agent/introduction_composing.py:145
↓ 1 callersMethodfinal_writing_checklist
(self, experiments_text: str)
paper_agent/experiments_composing.py:226
↓ 1 callersMethodfinal_writing_checklist
(self, related_work_text: str)
paper_agent/related_work_composing_using_template.py:128
↓ 1 callersMethodfind_all_paths
(self, start, end, max_cycle_repeat=2)
research_agent/inno/workflow/flowgraph.py:127
↓ 1 callersFunctionfind_json_boundaries
(text)
research_agent/run_infer_idea.py:34
↓ 1 callersFunctionfind_json_boundaries
(text)
research_agent/run_infer_plan.py:33
↓ 1 callersMethodfind_on_page
Searches for the query from the current viewport forward, looping back to the start if necessary.
research_agent/inno/environment/markdown_browser/requests_markdown_browser.py:210
↓ 1 callersFunctionfind_pdf_file
Find PDF file by paper title
benchmark_collection/1_create_inno_graph.py:56
↓ 1 callersMethodfind_task1_content
Find the task1 content for the target paper from benchmark dataset
paper_agent/introduction_composing.py:26
↓ 1 callersFunctionflatten_google_scholar_results
extract the paper information from the Google Scholar search results, return the structured list of dictionaries
research_agent/inno/tools/inno_tools/web_tools.py:368
↓ 1 callersFunctionformat_time
Convert seconds to human readable time string
benchmark_collection/1_create_inno_graph.py:32
↓ 1 callersMethodforward
(self, user_graph, user_item_graph, item_graph)
examples/hgcl/project/model/contrastive_model.py:22
↓ 1 callersMethodforward
(self, *args, **kwargs)
research_agent/inno/workflow/flowcache.py:114
↓ 1 callersMethodfrom_dict
(cls, data: Dict)
research_agent/inno/workflow/flowgraph.py:489
↓ 1 callersFunctiongen_code_tree_structure
Generate a tree structure of the code in the specified directory. Use this function when you need to know the overview of the codebase and want to gen
research_agent/inno/tools/terminal_tools.py:246
↓ 1 callersMethodgenerate_or_revise_structure
(self, content, current_structure, iteration)
paper_agent/conclusion_composing.py:26
↓ 1 callersMethodgenerate_or_revise_structure
(self, content, current_structure, iteration)
paper_agent/abstract_composing.py:27
↓ 1 callersMethodgenerate_or_revise_structure
(self, content: str, current_structure: str, iteration: int)
paper_agent/related_work_composing_using_template.py:15
↓ 1 callersFunctionget_all_cookies
()
research_agent/inno/environment/browser_cookies.py:48
↓ 1 callersFunctionget_api_guide
根据环境变量名返回对应的API获取指南 Args: key: 环境变量名 Returns: str: API获取指南链接或说明
web_ai_researcher.py:767
↓ 1 callersFunctionget_args
()
research_agent/run_infer_plan.py:59
↓ 1 callersFunctionget_args_paper
()
main_ai_researcher.py:28
↓ 1 callersFunctionget_base64_image
(image_path)
web_ai_researcher.py:151
↓ 1 callersMethodget_chat_completion
( self, agent: Agent, history: List, context_variables: dict, model_ov
research_agent/inno/core.py:110
↓ 1 callersMethodget_citations
Get citation count from Semantic Scholar API
benchmark_collection/0_crawl_paper.py:122
↓ 1 callersFunctionget_code_review_agent
(model: str, **kwargs)
research_agent/inno/agents/inno_agent/judge_agent.py:47
↓ 1 callersFunctionget_code_survey_agent
(model: str, **kwargs)
research_agent/inno/agents/inno_agent/survey_agent.py:82
↓ 1 callersMethodget_codebook_utilization
Calculate codebook utilization. Returns: float: Percentage of codebook entries being used
examples/fsq/project/model/quantization.py:107
↓ 1 callersMethodget_crossref_venue
(self, title: str)
benchmark_collection/0_crawl_paper.py:69
↓ 1 callersFunctionget_diff
f""" Get the diff of the 'metachain'.
research_agent/inno/tools/github_ops.py:21
↓ 1 callersMethodget_ego_embeddings
(self)
examples/hgcl/project/model/heterogeneous_gnn.py:21
↓ 1 callersFunctionget_error_prefix
(last_browser_action: str, last_browser_action_error: str)
research_agent/inno/tools/web_tools.py:127
↓ 1 callersMethodget_html_text_converter
(self)
research_agent/inno/environment/browser_env.py:380
↓ 1 callersFunctionget_idea_agent
(model: str, **kwargs)
research_agent/inno/agents/inno_agent/idea_agent.py:28
↓ 1 callersMethodget_node_predecessors_successors
Get the direct predecessors and successors of each node. Returns: dict: {node_name: {'predecessors': set(), 'suc
research_agent/inno/workflow/flowgraph.py:379
↓ 1 callersMethodget_regularization
(self)
examples/dccf/project/model/intent_module.py:72
↓ 1 callersMethodget_semantic_scholar_venue
(self, title: str)
benchmark_collection/0_crawl_paper.py:53
↓ 1 callersFunctionget_survey_agent
(model: str = "gpt-4o", **kwargs)
research_agent/inno/agents/inno_agent/survey_agent.py:159
↓ 1 callersFunctionget_type_info
(annotation, base_type_map)
research_agent/inno/util.py:116
↓ 1 callersMethodget_venue
(self, title: str)
benchmark_collection/0_crawl_paper.py:90
↓ 1 callersFunctiongoogle_scholar_search
Performs a Google Scholar search with the given query and page number. Args: query: The query to search for. page: The page
research_agent/inno/tools/inno_tools/web_tools.py:606
↓ 1 callersMethodhandle_function_result
(self, result, debug)
research_agent/inno/core.py:161
↓ 1 callersMethodimage_to_png_base64_url
Convert a numpy array to a base64 encoded png image url.
research_agent/inno/environment/browser_env.py:588
↓ 1 callersFunctionimport_agents_recursively
Recursively import all agents in .py files Args: base_dir: the root directory to start searching base_package: the base name
research_agent/inno/agents/__init__.py:29
↓ 1 callersFunctionimport_tools_recursively
Recursively import all tools in .py files Args: base_dir: the root directory to start searching base_package: the base name o
research_agent/inno/tools/__init__.py:32
↓ 1 callersMethodinit_browser
(self)
research_agent/inno/environment/browser_env.py:396
↓ 1 callersFunctioninterleave_user_into_messages
(messages: list[dict])
research_agent/inno/fn_call_converter.py:834
↓ 1 callersFunctionis_correct
(sample: str, gt_answer: str, dset: str)
benchmark/process/dataset_candidate/reasoning/math_reasoning/get_score.py:84
↓ 1 callersFunctionis_correct_gsm8k
(model_completion, gt_example)
benchmark/process/dataset_candidate/reasoning/math_reasoning/get_score.py:54
↓ 1 callersFunctionis_correct_minerva
(og_pred, gt)
benchmark/process/dataset_candidate/reasoning/math_reasoning/get_score.py:72
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