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Functions4,043 in github.com/Gaius-Augustus/Augustus

↓ 2 callersFunctionArrayEq
src/googletest/include/gtest/internal/gtest-internal.h:1040
↓ 2 callersFunctionAtomMatchesChar
Returns true iff the given atom (specified by escaped and pattern) matches ch. The result is undefined if the atom is invalid.
src/googletest/src/gtest-port.cc:792
↓ 2 callersFunctionCaptureStream
Starts capturing an output stream (stdout/stderr).
src/googletest/src/gtest-port.cc:1155
↓ 2 callersFunctionClose
src/googletest/include/gtest/internal/gtest-port.h:2142
↓ 2 callersFunctionConditionalPrintAsText
src/googletest/src/gtest-printers.cc:413
↓ 2 callersFunctionCreateKey
src/googletest/include/gtest/internal/gtest-port.h:1845
↓ 2 callersMethodCurrent
src/googletest/include/gtest/internal/gtest-param-util.h:237
↓ 2 callersMethodCurrentOsStackTraceExceptTop
Returns the current OS stack trace as an std::string. The maximum number of stack frames to be included is specified by the gtest_stack_trace_depth f
src/googletest/src/gtest.cc:825
↓ 2 callersFunctionDeleteList
Delete and free complete list */
auxprogs/compileSpliceCands/list.c:97
↓ 2 callersMethodDescribeNegationTo
Describes the negation of this matcher to an ostream.
src/googletest/include/gtest/gtest-matchers.h:269
↓ 2 callersMethodDirectoryExists
Returns true if pathname describes a directory in the file-system that exists.
src/googletest/src/gtest-filepath.cc:219
↓ 2 callersFunctionFClose
src/googletest/include/gtest/internal/gtest-port.h:2134
↓ 2 callersFunctionFailed
Returns true iff the unit test failed (i.e. some test suite failed or something outside of all tests failed).
src/googletest/src/gtest-internal-inl.h:581
↓ 2 callersFunctionFailed
Returns true iff the test suite failed.
src/googletest/include/gtest/gtest.h:892
↓ 2 callersFunctionFatalError
auxprogs/compileSpliceCands/list.c:13
↓ 2 callersFunctionFirst
auxprogs/compileSpliceCands/list.c:117
↓ 2 callersFunctionFormatCompilerIndependentFileLocation
Formats a file location for compiler-independent XML output. Although this function is not platform dependent, we put it next to FormatFileLocation in
src/googletest/src/gtest-port.cc:1034
↓ 2 callersFunctionFormatCxxExceptionMessage
Adds an "exception thrown" fatal failure to the current test.
src/googletest/src/gtest.cc:2374
↓ 2 callersFunctionFormatTestSuiteCount
Formats the count of test suites.
src/googletest/src/gtest.cc:2859
↓ 2 callersFunctionGTestIsInitialized
GTestIsInitialized() returns true iff the user has initialized Google Test. Useful for catching the user mistake of not initializing Google Test befo
src/googletest/src/gtest.cc:360
↓ 2 callersFunctionGetBitOffset
src/googletest/src/gtest.cc:2931
↓ 2 callersFunctionGetCapturedStream
Stops capturing the output stream and returns the captured string.
src/googletest/src/gtest-port.cc:1165
↓ 2 callersFunctionGetEnviron
src/googletest/src/gtest-death-test.cc:1215
↓ 2 callersMethodGetGlobalTestPartResultReporter
Returns the global test part result reporter.
src/googletest/src/gtest.cc:728
↓ 2 callersMethodGetId
src/googletest/src/gtest.cc:1111
↓ 2 callersFunctionGetInjectableArgvs
src/googletest/src/gtest-port.cc:1231
↓ 2 callersFunctionHRESULTFailureHelper
Helper function for IsHRESULT{SuccessFailure} predicates
src/googletest/src/gtest.cc:1681
↓ 2 callersFunctionHandleSehExceptionsInMethodIfSupported
src/googletest/src/gtest.cc:2405
↓ 2 callersFunctionInitGoogleTest
Initializes Google Test. This must be called before calling RUN_ALL_TESTS(). In particular, it parses a command line for the flags that Google Test
src/googletest/src/gtest.cc:6007
↓ 2 callersFunctionIsAsciiDigit
Returns true iff ch belongs to the given classification. Unlike similar functions in <ctype.h>, these aren't affected by the current locale.
src/googletest/src/gtest-port.cc:774
↓ 2 callersFunctionIsAsciiPunct
src/googletest/src/gtest-port.cc:775
↓ 2 callersFunctionIsAsciiWhiteSpace
src/googletest/src/gtest-port.cc:779
↓ 2 callersFunctionIsAsciiWordChar
src/googletest/src/gtest-port.cc:780
↓ 2 callersMethodIsDirectory
Returns true if FilePath ends with a path separator, which indicates that it is intended to represent a directory. Returns false otherwise. This does
src/googletest/src/gtest-filepath.cc:293
↓ 2 callersFunctionIsRepeat
src/googletest/src/gtest-port.cc:778
↓ 2 callersMethodL
by LogOddRatio
include/pp_profile.hh:311
↓ 2 callersFunctionLastFlagImpl
auxprogs/filterBam/src/BamSeqLibAccess.cc:14
↓ 2 callersMethodLock
src/googletest/include/gtest/internal/gtest-port.h:1918
↓ 2 callersFunctionMakeEmpty
auxprogs/compileSpliceCands/list.c:19
↓ 2 callersMethodMakeNewHolder
src/googletest/include/gtest/internal/gtest-port.h:1880
↓ 2 callersFunctionMakePolymorphicMatcher
src/googletest/include/gtest/gtest-matchers.h:577
↓ 2 callersMethodMatchAndExplain
Returns true iff the matcher matches x; also explains the match result to 'listener'.
src/googletest/include/gtest/gtest-matchers.h:255
↓ 2 callersFunctionMatchRegexAnywhere
Returns true iff regex matches any substring of str. regex must be a valid simple regular expression, or the result is undefined. The algorithm is r
src/googletest/src/gtest-port.cc:944
↓ 2 callersFunctionParseGoogleTestFlag
src/googletest/src/gtest.cc:5847
↓ 2 callersFunctionParseGoogleTestFlagsOnlyImpl
src/googletest/src/gtest.cc:5901
↓ 2 callersFunctionPortableLocaltime
src/googletest/src/gtest.cc:3664
↓ 2 callersFunctionPrintFullTestCommentIfPresent
src/googletest/src/gtest.cc:3072
↓ 2 callersFunctionPrintOnOneLine
Prints the given C-string on a single line by replacing all '\n' characters with string "\\n". If the output takes more than max_length characters, o
src/googletest/src/gtest.cc:5452
↓ 2 callersFunctionPrintStringTo
src/googletest/src/gtest-printers.cc:424
↓ 2 callersFunctionPrintTestPartResultToString
Prints a TestPartResult to an std::string.
src/googletest/src/gtest.cc:2889
↓ 2 callersFunctionPrintTo
src/googletest/include/gtest/gtest-printers.h:492
↓ 2 callersFunctionPrintWideStringTo
src/googletest/src/gtest-printers.cc:443
↓ 2 callersFunctionQuickSort
src/contentmodel.cc:290
↓ 2 callersFunctionRUN_ALL_TESTS
src/googletest/include/gtest/gtest.h:2503
↓ 2 callersFunctionRead
src/googletest/include/gtest/internal/gtest-port.h:2136
↓ 2 callersFunctionReadEntireFile
src/googletest/src/gtest-port.cc:1205
↓ 2 callersMethodRegisterTests
UnitTest class invokes this method to register tests in this test suite test suites right before running tests in RUN_ALL_TESTS macro. This method sho
src/googletest/include/gtest/internal/gtest-param-util.h:529
↓ 2 callersMethodRemoveFileName
RemoveFileName returns the directory path with the filename removed. Example: FilePath("path/to/file").RemoveFileName() returns "path/to/". If the Fil
src/googletest/src/gtest-filepath.cc:162
↓ 2 callersMethodRun
Runs the test and updates the test result.
src/googletest/src/gtest.cc:2489
↓ 2 callersMethodRun
src/googletest/include/gtest/internal/gtest-port.h:1395
↓ 2 callersMethodSetDefaultXmlGenerator
Sets the default_xml_generator attribute to the provided listener. The listener is also added to the listener list and previous default_xml_generator
src/googletest/src/gtest.cc:4511
↓ 2 callersMethodSetGlobalTestPartResultReporter
Sets the global test part result reporter.
src/googletest/src/gtest.cc:735
↓ 2 callersFunctionShouldShard
Checks whether sharding is enabled by examining the relevant environment variable values. If the variables are present, but inconsistent (i.e., shard_
src/googletest/src/gtest.cc:5323
↓ 2 callersFunctionSkipComma
src/googletest/include/gtest/internal/gtest-internal.h:657
↓ 2 callersFunctionSplitEscapedString
The string representation of the values received in EqFailure() are already escaped. Split them on escaped '\n' boundaries. Leave all other escaped ch
src/googletest/src/gtest.cc:1293
↓ 2 callersFunctionSplitString
src/googletest/src/gtest.cc:945
↓ 2 callersFunctionStat
src/googletest/include/gtest/internal/gtest-port.h:2087
↓ 2 callersFunctionStreamWideCharsToMessage
Converts an array of wide chars to a narrow string using the UTF-8 encoding, and streams the result to the given Message object.
src/googletest/src/gtest.cc:929
↓ 2 callersMethodSuppressEventForwarding
src/googletest/src/gtest.cc:4527
↓ 2 callersFunctionThreadLocal
src/googletest/include/gtest/internal/gtest-port.h:1813
↓ 2 callersFunctionUniversalPrintCharArray
src/googletest/src/gtest-printers.cc:294
↓ 2 callersMethodUnlock
src/googletest/include/gtest/internal/gtest-port.h:1919
↓ 2 callersFunctionValues
src/googletest/include/gtest/gtest-param-test.h:335
↓ 2 callersFunctionValuesIn
src/googletest/include/gtest/gtest-param-test.h:294
↓ 2 callersFunctionWideStringToUtf8
Converts a wide string to a narrow string in UTF-8 encoding. The wide string is assumed to have the following encoding: UTF-16 if sizeof(wchar_t) == 2
src/googletest/src/gtest.cc:1841
↓ 2 callersMethodaddBlocksUntil
src/pp_profile.cc:338
↓ 2 callersMethodaddCharacter
src/motif.cc:77
↓ 2 callersFunctionaddExonToGene
src/mea.cc:207
↓ 2 callersMethodaddIncompGroup
* HintGroup::addIncompGroup */
src/hints.cc:830
↓ 2 callersFunctionaddIntronHint
add new hint into the list of intron hints
auxprogs/bam2hints/bam2hints.cc:161
↓ 2 callersMethodaddSampleCount
* Transcript::addSampleCount * add p to the apostprob of the transcript as well to the apostprob of all states */
src/gene.cc:1098
↓ 2 callersMethodaddStatePostProbs
src/gene.cc:1068
↓ 2 callersMethodaddStrongerGroup
* HintGroup::addStrongerGroup */
src/hints.cc:845
↓ 2 callersMethodaddUTR
src/gene.cc:1563
↓ 2 callersMethodaddWeight
src/graph.cc:1246
↓ 2 callersMethodaddWeights
src/merkmal.cc:252
↓ 2 callersMethodalmostIdenticalTo
* almostIdenticalTo * Transcript a is almost identical to transcript b iff * they are identical up to a small shift in the tss or tts. */
src/gene.cc:1263
↓ 2 callersMethodappendGene
src/gene.cc:2868
↓ 2 callersFunctionappendRow
* append row r2 to r1, thereby shifting all alignment coordinates of r2 by aliLen1 * if signature string (chr and strand) is not empty, treat everyth
src/alignment.cc:147
↓ 2 callersMethodargmax
returns character of the amino acid with the highest value
include/pp_profile.hh:318
↓ 2 callersFunctionaugustify_seq
Function that runs a subprocess with arguments and specified STDOUT and STDERR
scripts/augustify.py:241
↓ 2 callersMethodbeginTransaction
src/sqliteDB.cc:39
↓ 2 callersMethodbindInt64
src/sqliteDB.cc:210
↓ 2 callersMethodbindText
auxprogs/homGeneMapping/src/sqliteDB.cc:103
↓ 2 callersMethodblockCount
accessing prfl
include/pp_scoring.hh:445
↓ 2 callersMethodbuildGraph
src/graph.cc:28
↓ 2 callersFunctionbuildStatusList
src/mea.cc:115
↓ 2 callersMethodcheckRange
src/genbank.cc:505
↓ 2 callersFunctioncheck_tool_in_given_path
If TOOL_PATH is provided as command-line option, check whether the required binary is executable in that directory; return tool binary with f
scripts/augustify.py:147
↓ 2 callersMethodcheckedSuffixScore
src/pp_profile.cc:438
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