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github.com/Gaius-Augustus/Augustus
/ functions
Functions
4,043 in github.com/Gaius-Augustus/Augustus
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Functions
4,043
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Types & classes
931
↓ 2 callers
Method
set_subtype
! @brief sets the binary subtype Sets the binary subtype of the value, also flags a binary JSON value as having a subtype, which has impl
include/json.hpp:4492
↓ 2 callers
Function
sgd
src/train_logReg_param.cc:488
↓ 2 callers
Method
shift
* SequenceFeatureCollection::shift */
src/extrinsicinfo.cc:177
↓ 2 callers
Method
size
STL-style container methods.
src/googletest/include/gtest/internal/gtest-internal.h:1142
↓ 2 callers
Function
skip_whitespace
include/json.hpp:7371
↓ 2 callers
Method
smoothFeatures
src/merkmal.cc:265
↓ 2 callers
Method
sortTranscripts
* sort transcripts by * 1. percentage supported by hints * 2. a posteriori probabilities */
src/gene.cc:2745
↓ 2 callers
Function
sp_site_conversion
auxprogs/utrrnaseq/src/Splice_Sites.cpp:72
↓ 2 callers
Function
splitString
src/compgenepred.cc:913
↓ 2 callers
Method
start_timestamp
Gets the time of the test program start, in ms from the start of the UNIX epoch.
src/googletest/src/gtest.cc:4627
↓ 2 callers
Function
stillSorted
checks if the input is still sorted*/
auxprogs/aln2wig/aln2wig.c:110
↓ 2 callers
Function
strandeq
auxprogs/joingenes/jg_transcript.cpp:1253
↓ 2 callers
Method
testPrecision
include/lldouble.hh:202
↓ 2 callers
Function
toExonType
src/exoncand.cc:103
↓ 2 callers
Method
totalSubstateCount
include/vitmatrix.hh:572
↓ 2 callers
Method
total_part_count
Gets the number of all test parts. This is the sum of the number of successful test parts and the number of failed test parts.
src/googletest/src/gtest.cc:2222
↓ 2 callers
Function
train_OEscore_params
src/train_logReg_param.cc:24
↓ 2 callers
Method
training_new_species
(self, crf)
tests/short/examples/test_examples.py:377
↓ 2 callers
Function
turnOff
(showItem, linkItem)
docs/tutorial2015/tutorial.js:18
↓ 2 callers
Function
turnOff
(showItem, linkItem)
docs/tutorial/tutorial.js:18
↓ 2 callers
Function
turnOff
(showItem, linkItem)
docs/tutorial-cgp/tutorial.js:18
↓ 2 callers
Function
turnOn
(showItem, linkItem)
docs/tutorial2015/tutorial.js:22
↓ 2 callers
Function
turnOn
(showItem, linkItem)
docs/tutorial/tutorial.js:22
↓ 2 callers
Function
turnOn
(showItem, linkItem)
docs/tutorial-cgp/tutorial.js:22
↓ 2 callers
Method
updatePars
src/merkmal.cc:270
↓ 2 callers
Function
usage
auxprogs/bam2wig/bam2wig.c:38
↓ 2 callers
Method
val
include/pp_fastBlockSearcher.hh:291
↓ 2 callers
Method
verbalDescription
src/merkmal.cc:47
↓ 2 callers
Function
warnAllLowerCase
* Print a warning if --softmasking=1 (default) and all sequences are * completely in lowercase characters. This can happen in particular * if the in
src/augustus.cc:615
↓ 2 callers
Method
weakerThan
* Feature::weakerThan * True if every gene structure that is compatible with 'other' also is compatible with 'this'. * Strictly is true, if there co
src/hints.cc:449
↓ 2 callers
Function
workAtOverlap
auxprogs/joingenes/jg_transcript.cpp:55
↓ 2 callers
Method
write
include/vitmatrix.hh:728
↓ 2 callers
Function
writePictograph
* print a pictograph from values in a vector */
auxprogs/homGeneMapping/include/projectio.hh:135
↓ 2 callers
Method
write_bson
! @param[in] j JSON value to serialize @pre j.type() == value_t::object */
include/json.hpp:12773
↓ 2 callers
Method
write_cbor
! @param[in] j JSON value to serialize */
include/json.hpp:12793
↓ 2 callers
Method
write_msgpack
! @param[in] j JSON value to serialize */
include/json.hpp:13098
↓ 2 callers
Method
write_ubjson
! @param[in] j JSON value to serialize @param[in] use_count whether to use '#' prefixes (optimized format) @param[in] use_type wheth
include/json.hpp:13422
↓ 1 callers
Method
Abort
Signals that the death test code which should have exited, didn't. Should be called only in a death test child process. Writes a status byte to the ch
src/googletest/src/gtest-death-test.cc:509
↓ 1 callers
Method
AddEnvironment
Registers and returns a global test environment. When a test program is run, all global test environments will be set-up in the order they were regis
src/googletest/src/gtest.cc:4684
↓ 1 callers
Function
AlwaysFalse
Always returns false.
src/googletest/include/gtest/internal/gtest-internal.h:843
↓ 1 callers
Function
AppendUserMessage
Appends the user-supplied message to the Google-Test-generated message.
src/googletest/src/gtest.cc:2017
↓ 1 callers
Method
AssertHeld
Does nothing if the current thread holds the mutex. Otherwise, crashes with high probability.
src/googletest/src/gtest-port.cc:375
↓ 1 callers
Method
AtEnd
src/googletest/include/gtest/internal/gtest-param-util.h:843
↓ 1 callers
Method
Begin
src/googletest/include/gtest/internal/gtest-param-util.h:212
↓ 1 callers
Method
CRFbuildParameters
* CRFbuildParameters * Starting from the HMM parameters use CRF training to iteratively (re)estimate some parameters. */
src/etraining.cc:214
↓ 1 callers
Function
CalculateOptimalEdits
src/googletest/src/gtest.cc:1049
↓ 1 callers
Function
CanonicalizeForStdLibVersioning
Canonicalizes a given name with respect to the Standard C++ Library. This handles removing the inline namespace within `std` that is used by various s
src/googletest/include/gtest/internal/gtest-type-util.h:64
↓ 1 callers
Function
ClearNonAdHocTestResult
Clears the results of all tests, except the ad hoc tests.
src/googletest/src/gtest-internal-inl.h:722
↓ 1 callers
Method
ClearResult
Clears the results of all tests in this test suite.
src/googletest/src/gtest.cc:2824
↓ 1 callers
Method
CloseConnection
Closes the socket.
src/googletest/src/gtest-internal-inl.h:1099
↓ 1 callers
Function
CmpHelperEQFailure
src/googletest/include/gtest/gtest.h:1497
↓ 1 callers
Function
CmpHelperSTREQ
Helper function for *_STREQ on wide strings.
src/googletest/src/gtest.cc:1887
↓ 1 callers
Function
CodePointToUtf8
Converts a Unicode code point to a narrow string in UTF-8 encoding. code_point parameter is of type UInt32 because wchar_t may not be wide enough to c
src/googletest/src/gtest.cc:1777
↓ 1 callers
Function
ContainsUnprintableControlCodes
src/googletest/src/gtest-printers.cc:357
↓ 1 callers
Function
CopyArray
src/googletest/include/gtest/internal/gtest-internal.h:1080
↓ 1 callers
Function
CreateCodePointFromUtf16SurrogatePair
Creates a Unicode code point from UTF16 surrogate pair.
src/googletest/src/gtest.cc:1818
↓ 1 callers
Method
CreateDirectoriesRecursively
Create directories so that path exists. Returns true if successful or if the directories already exist; returns false if unable to create directories
src/googletest/src/gtest-filepath.cc:301
↓ 1 callers
Method
CreateFolder
Create the directory so that path exists. Returns true if successful or if the directory already exists; returns false if unable to create the directo
src/googletest/src/gtest-filepath.cc:318
↓ 1 callers
Method
CreateTestFactory
src/googletest/include/gtest/internal/gtest-param-util.h:436
↓ 1 callers
Function
CreateUnifiedDiff
Create a list of diff hunks in Unified diff format. Each hunk has a header generated by PrintHeader above plus a body with lines prefixed with ' ' for
src/googletest/src/gtest.cc:1224
↓ 1 callers
Function
DeathTestThreadWarning
Generates a textual failure message when a death test finds more than one thread running, or cannot determine the number of threads, prior to executin
src/googletest/src/gtest-death-test.cc:239
↓ 1 callers
Function
DefaultPrintNonContainerTo
src/googletest/include/gtest/gtest-printers.h:259
↓ 1 callers
Function
DefaultPrintTo
src/googletest/include/gtest/gtest-printers.h:415
↓ 1 callers
Function
Delete
Delete a node from the passed in list L. Cell pointed to by P->Next is deleted. */
auxprogs/compileSpliceCands/list.c:53
↓ 1 callers
Function
DeleteThreadLocalValue
src/googletest/include/gtest/internal/gtest-port.h:1803
↓ 1 callers
Method
End
src/googletest/include/gtest/internal/gtest-param-util.h:215
↓ 1 callers
Method
Equals
src/googletest/include/gtest/internal/gtest-param-util.h:238
↓ 1 callers
Function
ExecDeathTestChildMain
The main function for a threadsafe-style death test child process. This function is called in a clone()-ed process and thus must avoid any potentially
src/googletest/src/gtest-death-test.cc:1232
↓ 1 callers
Function
ExecDeathTestSpawnChild
Spawns a child process with the same executable as the current process in a thread-safe manner and instructs it to run the death test. The implementa
src/googletest/src/gtest-death-test.cc:1295
↓ 1 callers
Function
ExitSummary
Generates a textual description of a given exit code, in the format specified by wait(2).
src/googletest/src/gtest-death-test.cc:204
↓ 1 callers
Function
FDOpen
src/googletest/include/gtest/internal/gtest-port.h:2132
↓ 1 callers
Function
FailFromInternalError
This is called from a death test parent process to read a failure message from the death test child process and log it with the FATAL severity. On Win
src/googletest/src/gtest-death-test.cc:345
↓ 1 callers
Function
FileNo
src/googletest/include/gtest/internal/gtest-port.h:2082
↓ 1 callers
Method
FileOrDirectoryExists
Returns true if pathname describes something findable in the file-system, either a file, directory, or whatever.
src/googletest/src/gtest-filepath.cc:205
↓ 1 callers
Function
FindPrevious
Find the previous item of X (maybe use a double linked list instead?) */
auxprogs/compileSpliceCands/list.c:70
↓ 1 callers
Function
FormatEpochTimeInMillisAsIso8601
Converts the given epoch time in milliseconds to a date string in the ISO 8601 format, without the timezone information.
src/googletest/src/gtest.cc:3681
↓ 1 callers
Function
FormatEpochTimeInMillisAsRFC3339
Converts the given epoch time in milliseconds to a date string in the RFC3339 format, without the timezone information.
src/googletest/src/gtest.cc:4043
↓ 1 callers
Function
FormatSehExceptionMessage
Adds an "exception thrown" fatal failure to the current test. This function returns its result via an output parameter pointer because VC++ prohibits
src/googletest/src/gtest.cc:2358
↓ 1 callers
Function
FormatWordList
src/googletest/src/gtest.cc:2138
↓ 1 callers
Function
FullMatch
FullMatch(str, re) returns true iff regular expression re matches the entire str. PartialMatch(str, re) returns true iff regular expression re matches
src/googletest/include/gtest/internal/gtest-port.h:937
↓ 1 callers
Method
Generate
Generates a random number from [0, range), using a Linear Congruential Generator (LCG). Crashes if 'range' is 0 or greater than kMaxRange.
src/googletest/src/gtest.cc:340
↓ 1 callers
Function
GetAnsiColorCode
Returns the ANSI color code for the given color. COLOR_DEFAULT is an invalid input.
src/googletest/src/gtest.cc:2966
↓ 1 callers
Function
GetCapturedStderr
Stops capturing stderr and returns the captured string.
src/googletest/src/gtest-port.cc:1190
↓ 1 callers
Method
GetCapturedString
src/googletest/src/gtest-port.cc:1125
↓ 1 callers
Function
GetColorAttribute
Returns the character attribute for the given color.
src/googletest/src/gtest.cc:2922
↓ 1 callers
Function
GetCurrentExecutableName
Returns the current application's name, removing directory path if that is present.
src/googletest/src/gtest.cc:429
↓ 1 callers
Function
GetDefaultFilter
Bazel passes in the argument to '--test_filter' via the TESTBRIDGE_TEST_ONLY environment variable.
src/googletest/src/gtest.cc:203
↓ 1 callers
Function
GetFileSize
src/googletest/src/gtest-port.cc:1200
↓ 1 callers
Function
GetMutableSuiteCase
Gets the i-th test suite among all the test suites. i can range from 0 to total_test_suite_count() - 1. If i is not in that range, returns NULL.
src/googletest/src/gtest-internal-inl.h:599
↓ 1 callers
Function
GetNewColor
src/googletest/src/gtest.cc:2942
↓ 1 callers
Function
GetNextRandomSeed
Returns the first valid random seed after 'seed'. The behavior is undefined if 'seed' is invalid. The seed after kMaxRandomSeed is considered to be
src/googletest/src/gtest-internal-inl.h:146
↓ 1 callers
Function
GetRandomSeedFromFlag
Returns a random seed in range [1, kMaxRandomSeed] based on the given --gtest_random_seed flag value.
src/googletest/src/gtest-internal-inl.h:130
↓ 1 callers
Function
GetStatusFileDescriptor
Recreates the pipe and event handles from the provided parameters, signals the event, and returns a file descriptor wrapped around the pipe handle. Th
src/googletest/src/gtest-death-test.cc:1511
↓ 1 callers
Method
GetTestSuiteTypeId
Test case id to verify identity.
src/googletest/include/gtest/internal/gtest-param-util.h:502
↓ 1 callers
Function
GetThreadCount
Returns the number of active threads, or 0 when there is an error.
src/googletest/src/gtest-port.cc:117
↓ 1 callers
Method
HMMbuildParameters
* HMMbuildParameters * Use simple local maximum likelihood estimation of all the probabilistic models. */
src/etraining.cc:184
↓ 1 callers
Function
HasGoogleTestFlagPrefix
Determines whether a string has a prefix that Google Test uses for its flags, i.e., starts with GTEST_FLAG_PREFIX_ or GTEST_FLAG_PREFIX_DASH_. If Goog
src/googletest/src/gtest.cc:5730
↓ 1 callers
Function
InitDeathTestSubprocessControlInfo
src/googletest/src/gtest-internal-inl.h:770
↓ 1 callers
Function
IsATTY
src/googletest/include/gtest/internal/gtest-port.h:2064
↓ 1 callers
Method
IsAbsolutePath
Returns true if pathname describes an absolute path.
src/googletest/src/gtest-filepath.cc:258
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