Function loadGenes

src/gep/assetStore.js:320–355

()

}

function loadGenes() {
  ensureGenesSeeded();
  const jsonGenes = readJsonIfExists(genesPath(), getDefaultGenes()).genes || [];
  const jsonlGenes = [];
  try {
    const p = path.join(getGepAssetsDir(), 'genes.jsonl');
    if (fs.existsSync(p)) {
      const raw = fs.readFileSync(p, 'utf8');
      raw.split('\n').forEach(line => {
        if (line.trim()) {
          try {
            const parsed = JSON.parse(line);
            if (parsed && parsed.type === 'Gene') jsonlGenes.push(parsed);
          } catch(e) {}
        }
      });
    }
  } catch(e) {
    console.warn('[AssetStore] Failed to read genes.jsonl:', e && e.message || e);
  }

  // Combine and deduplicate by ID (JSONL takes precedence). Do NOT pass loaded
  // genes through createGene() — that would synthesize default fields
  // (epigenetic_marks, learning_history, anti_patterns, summary,
  // schema_version) on legacy genes that pre-date those fields, which would
  // change their content hash and invalidate any previously-computed
  // asset_id. Read paths must preserve on-disk gene shapes byte-for-byte;
  // callers that need normalized fields should call createGene() explicitly
  // (and write back via upsertGene which recomputes asset_id).
  const combined = [...jsonGenes, ...jsonlGenes];
  const unique = new Map();
  combined.forEach(g => {
    if (g && g.id) unique.set(String(g.id), g);
  });
  return Array.from(unique.values());
}

function loadCapsules() {
  const legacy = readJsonIfExists(capsulesPath(), getDefaultCapsules()).capsules || [];