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hub / github.com/EmoryUniversityTheoreticalBiophysics/SirIsaac

github.com/EmoryUniversityTheoreticalBiophysics/SirIsaac @main

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312 symbols 858 edges 41 files 159 documented · 51% ● updated 3y ago★ 388 open issues
What it actually does AI analysis from the code graph — generated when you open this
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Core symbols most depended-on inside this repo

_setTerm
called by 60
SirIsaac/fittingProblem.py
getParameters
called by 37
SirIsaac/fittingProblem.py
calcForAllFpds
called by 18
SirIsaac/analyzeFittingProblemDict.py
strCombine
called by 17
SirIsaac/phosphorylationFit_MakeBNGL.py
save
called by 16
SirIsaac/simplePickle.py
generalSetup
called by 16
SirIsaac/fittingProblem.py
done
called by 16
SirIsaac/fittingProblem.py
load
called by 15
SirIsaac/simplePickle.py

Shape

Method 165
Function 112
Class 35

Languages

Python100%

Modules by API surface

SirIsaac/fittingProblem.py149 symbols
SirIsaac/analyzeFittingProblemDict.py32 symbols
SirIsaac/fitAllParallel.py27 symbols
SirIsaac/fittingProblemMultipleCondition.py21 symbols
SirIsaac/phosphorylationFit_netModel.py14 symbols
SirIsaac/gaussianPrior.py12 symbols
test/test_fitting_problem.py7 symbols
SirIsaac/phosphorylationFit_MakeBNGL.py7 symbols
test/test_parallel.py5 symbols
SirIsaac/powerLawYeastOscillator.py4 symbols
test/test_SloppyCell.py3 symbols
test/test_canary.py2 symbols

For agents

$ claude mcp add SirIsaac \
  -- python -m otcore.mcp_server <graph>

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