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312 symbols 858 edges 41 files 159 documented · 51% ● updated 3y ago★ 388 open issues

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⨍ Functions 277◇ Types & classes 35

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Core symbols most depended-on inside this repo

↓ 8 filesSloppyCellFittingModel

A general SloppyCell Network that will be used to fit data under a set of experimental conditions. Uses Levenberg-Marquardt …

SirIsaac/fittingProblem.py

↓ 8 filesload

SirIsaac/simplePickle.py

↓ 6 filesFittingProblem

A "fitting problem" contains data to be fitted, a sequence of models that attempt to fit the model, the results of fitting, ... …

SirIsaac/fittingProblem.py

↓ 7 filessave

SirIsaac/simplePickle.py

↓ 3 filesEnsembleGenerator

Uses a simulated-annealing-type approach to search for the global minimum. An initial ensemble is generated at temperature temp …

SirIsaac/fittingProblem.py

↓ 2 filesPowerLawFittingProblem

7.2.09 Now includes possibility of priors favoring parameters that are smaller in magnitude. (set priorSigma=None for no priors)

SirIsaac/fittingProblem.py

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Method 165

Function 112

Class 35

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Modules by API surface

SirIsaac/fittingProblem.py149 symbols

SirIsaac/analyzeFittingProblemDict.py32 symbols

SirIsaac/fitAllParallel.py27 symbols

SirIsaac/fittingProblemMultipleCondition.py21 symbols

SirIsaac/phosphorylationFit_netModel.py14 symbols

SirIsaac/gaussianPrior.py12 symbols

test/test_fitting_problem.py7 symbols

SirIsaac/phosphorylationFit_MakeBNGL.py7 symbols

test/test_parallel.py5 symbols

SirIsaac/powerLawYeastOscillator.py4 symbols

test/test_SloppyCell.py3 symbols

test/test_canary.py2 symbols

For agents

$ claude mcp add SirIsaac \
  -- python -m otcore.mcp_server <graph>

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github.com/EmoryUniversityTheoreticalBiophysics/SirIsaac @main

Core symbols most depended-on inside this repo

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