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github.com/DerrickWood/kraken @v1.1.1

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repository ↗ · DeepWiki ↗ · release v1.1.1 ↗ · + Follow

83 symbols 179 edges 15 files 20 documented · 24% ● updated 4y agov1.1.1 · 2019-05-04★ 22745 open issues

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⨍ Functions 74 ◇ Types & classes 9

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README

Kraken taxonomic sequence classification system

Please see the Kraken webpage or the Kraken manual for information on installing and operating Kraken. A local copy of the Kraken manual is also present here in the docs/ directory (MANUAL.html and MANUAL.markdown).

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src/krakendb.cpp22 symbols

src/quickfile.cpp9 symbols

src/classify.cpp9 symbols

src/krakenutil.cpp8 symbols

src/set_lcas.cpp7 symbols

src/kmer_estimator.cpp5 symbols

src/db_sort.cpp5 symbols

src/seqreader.hpp4 symbols

src/seqreader.cpp4 symbols

src/make_seqid_to_taxid_map.cpp3 symbols

src/db_shrink.cpp3 symbols

src/krakendb.hpp2 symbols

For agents

$ claude mcp add kraken \
  -- python -m otcore.mcp_server <graph>

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github.com/DerrickWood/kraken @v1.1.1

Kraken taxonomic sequence classification system

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