Function doctor

src/codegraphcontext/cli/main.py:843–1034

Run diagnostics to check system health and configuration. Checks: - Configuration validity - Database connectivity - Tree-sitter installation - Required dependencies - File permissions

()

@app.command()
def doctor():
    """
    Run diagnostics to check system health and configuration.
    
    Checks:
    - Configuration validity
    - Database connectivity
    - Tree-sitter installation
    - Required dependencies
    - File permissions
    """
    console.print("[bold cyan]🏥 Running CodeGraphContext Diagnostics...[/bold cyan]\n")
    
    all_checks_passed = True

    config_manager.ensure_first_run_bootstrap()
    config_manager.ensure_config_file()
    
    # 1. Check configuration
    console.print("[bold]1. Checking Configuration...[/bold]")
    config = {}
    try:
        config = config_manager.load_config()
        
        if config_manager.CONFIG_FILE.exists():
            console.print(f"   [green]✓[/green] Config loaded from {config_manager.CONFIG_FILE}")
        else:
            console.print(f"   [yellow]ℹ[/yellow] No .env config found, using defaults")
            console.print(f"   [dim]Config will be created at: {config_manager.CONFIG_FILE}[/dim]")
            
        if config_manager.CONTEXT_CONFIG_FILE.exists():
            console.print(f"   [green]✓[/green] Context config loaded from {config_manager.CONTEXT_CONFIG_FILE}")
        else:
            console.print(f"   [yellow]ℹ[/yellow] No Context config found")
            console.print(f"   [dim]Context config will be auto-generated at: {config_manager.CONTEXT_CONFIG_FILE}[/dim]")
        
        # Validate each config value
        invalid_configs = []
        for key, value in config.items():
            is_valid, error_msg = config_manager.validate_config_value(key, value)
            if not is_valid:
                invalid_configs.append(f"{key}: {error_msg}")
        
        if invalid_configs:
            console.print(f"   [red]✗[/red] Invalid configuration values found:")
            for err in invalid_configs:
                console.print(f"     - {err}")
            all_checks_passed = False
        else:
            console.print(f"   [green]✓[/green] All configuration values are valid")
    except Exception as e:
        console.print(f"   [red]✗[/red] Configuration error: {e}")
        all_checks_passed = False
    
    # 2. Check database connectivity
    console.print("\n[bold]2. Checking Database Connection...[/bold]")
    try:
        _load_credentials()