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hub / github.com/CoBiG2/RAD_Tools / remove_sites

Function remove_sites

vcf_parser.py:53–90  ·  view source on GitHub ↗

Removes invariable sites from a VCF file. This assumes that the genotype columns start at the 10th column until the last column :param vcf_file: string, path to vcf file :param mode: string, specifies the removal operation. May be one of the following: .:"inv": Removes i

(vcf_file, mode="inv", suffix="_NoInv.vcf")

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Callers 1

mainFunction · 0.85

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