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hub / github.com/CoBiG2/RAD_Tools / parse_vcf_variants

Function parse_vcf_variants

VCF2phy.py:81–122  ·  view source on GitHub ↗

Parses the VCF but retains the variation information. This is done when converting a VCF directly to phylip without using a .loci file. The resulting phylip file will contain only variable sites, though.

(vcf_file)

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Callers 1

mainFunction · 0.85

Calls 1

convert_genotypeFunction · 0.85

Tested by

no test coverage detected