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hub / github.com/CoBiG2/RAD_Tools / parse_loci

Function parse_loci

VCF2phy.py:159–213  ·  view source on GitHub ↗

Writes a phylip file from a loci file, according to the positions in the VCF. Variable positions that are not present in the VCF are soft masked

(loci_file, vcf_loci, taxa_list)

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Callers 1

mainFunction · 0.85

Calls 1

mask_alignmentFunction · 0.85

Tested by

no test coverage detected