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Functions2,053 in github.com/COLA-Laboratory/TransOPT

↓ 4 callersMethodreset
(self, design_space:Dict, search_sapce:Union[None, Dict] = None)
transopt/optimizer/SingleObjOptimizer/LFL.py:51
↓ 4 callersFunctionroll_col
Rotate columns to right by shift.
transopt/optimizer/model/sgpt.py:13
↓ 4 callersMethodsave_data
(self, dataset_name, parameters, observations, iteration)
transopt/agent/services.py:356
↓ 4 callersMethodsearch_similar_datasets
(self, problem_config)
transopt/datamanager/manager.py:68
↓ 4 callersFunctiontchebycheff
:param X: data points np array with (1, n_var) or (n_sample, n_var) :param W: weights np array with (1, n_var) or (n_sample, n_var) :pa
transopt/utils/weights.py:48
↓ 4 callersMethodtrain
(self)
transopt/benchmark/HPOOOD/algorithms.py:1593
↓ 4 callersFunctionupdateFormValue
({updateType, value})
webui/src/features/user/Login.js:33
↓ 4 callersMethodupdate_process_info
(self, pid, updates)
transopt/agent/services.py:474
↓ 3 callersMethod__init__
(self, input_shape, num_classes, architecture, model_size, mixup, device, hparams)
transopt/benchmark/HPO/algorithms.py:69
↓ 3 callersMethod__init__
(self, n_inputs, n_outputs, hparams)
transopt/benchmark/HBOROB/algorithms.py:56
↓ 3 callersMethod__new__
(cls, *args, **kwargs)
transopt/utils/Prior.py:16
↓ 3 callersMethod_fix_bound
(data, bound)
transopt/benchmark/synthetic/MovingPeakBenchmark.py:149
↓ 3 callersMethod_get_conditions
Construct SQL conditions for a query based on rowid and additional conditions. Parameters ---------- rowid: int/list
transopt/datamanager/database.py:513
↓ 3 callersFunction_hparams
Global registry of hyperparams. Each entry is a (default, random) tuple. New algorithms / networks / etc. should add entries here.
transopt/benchmark/HPOOOD/hparams_registry.py:9
↓ 3 callersMethod_prototype
(self, other, op)
transopt/benchmark/HPOOOD/misc.py:236
↓ 3 callersMethod_raw_predict
Predict functions distribution(s) for given test point(s) without taking into account data normalization. If `self._normalize` is `False`, ret
transopt/optimizer/model/rf.py:89
↓ 3 callersMethod_wide_layer
(self, block, planes, num_blocks, dropout_rate, stride)
transopt/benchmark/HPO/wide_resnet.py:87
↓ 3 callersMethod_wide_layer
(self, block, planes, num_blocks, dropout, stride)
transopt/benchmark/HPO/networks.py:201
↓ 3 callersMethod_wide_layer
(self, block, planes, num_blocks, dropout_rate, stride)
transopt/benchmark/HPOOOD/wide_resnet.py:87
↓ 3 callersFunctionax_plot
(title, ax, train_x, plot_y, test_size, cmap)
transopt/utils/Visualization.py:71
↓ 3 callersMethodbuild_type1_combination
(self,group,test,filler)
transopt/benchmark/HPOOOD/ooddatasets.py:444
↓ 3 callersMethodbuild_type2_combination
(self,group,test)
transopt/benchmark/HPOOOD/ooddatasets.py:467
↓ 3 callersMethodcalculate_distances
Calculate pairwise distances between configurations. Parameters: X (np.ndarray): Encoded data matrix. Returns:
transopt/analysis/mds.py:19
↓ 3 callersMethodcheck_table_exist
Check if a certain database table exists.
transopt/datamanager/database.py:203
↓ 3 callersMethodconvert
(dct)
transopt/ResultAnalysis/AnalysisBase.py:79
↓ 3 callersFunctionconvert_minimization
Convert maximization to minimization. Example usage: Y = np.array([[1, 4, 3], [2, 1, 4], [3, 2, 2]]) obj_type = ['min', 'max', 'min'
transopt/utils/pareto.py:10
↓ 3 callersMethodexecutemany
( self, query, params=None, fetchone=False, fetchall=False, ti
transopt/datamanager/database.py:144
↓ 3 callersMethodgaussian_kernel
(self, x, y, gamma=[0.0001, 0.001, 0.01, 0.1, 1, 10, 100, 1000])
transopt/benchmark/HPOOOD/algorithms.py:381
↓ 3 callersMethodgaussian_kernel
(self, x, y, gamma=[0.001, 0.01, 0.1, 1, 10, 100, 1000])
transopt/benchmark/HPOOOD/algorithms.py:724
↓ 3 callersMethodgaussian_kernel
(self, x, y, gamma=[0.001, 0.01, 0.1, 1, 10, 100, 1000])
transopt/benchmark/HPOOOD/algorithms.py:2020
↓ 3 callersMethodget
(self)
transopt/optimizer/pretrain/deepkernelpretrain.py:40
↓ 3 callersMethodget_cur_searchspace
(self)
transopt/benchmark/problem_base/transfer_problem.py:86
↓ 3 callersMethodget_design_variable
(self, name)
transopt/space/search_space.py:33
↓ 3 callersFunctionget_hparam_space
Returns a dictionary of hyperparameter spaces for the given algorithm and dataset. Each entry is a tuple of (type, range) where type is 'floa
transopt/benchmark/HPO/hparams_registry.py:40
↓ 3 callersMethodget_lockstate
(self)
transopt/benchmark/problem_base/transfer_problem.py:116
↓ 3 callersMethodget_response
(self, user_input)
transopt/agent/chat/openai_chat.py:335
↓ 3 callersMethodget_rest_budget
(self)
transopt/benchmark/problem_base/transfer_problem.py:58
↓ 3 callersMethodget_state
Get the current state of the surrogate. Returns: current_state: A dictionary that represents the current
transopt/optimizer/model/dyhpo.py:404
↓ 3 callersMethodlink_space
(self, space)
transopt/optimizer/acquisition_function/acf_base.py:47
↓ 3 callersMethodload
Loads dataset from OpenML in config_file.data_directory. Downloads data if necessary. Returns ------- X_trai
transopt/utils/openml_data_manager.py:276
↓ 3 callersFunctionload_data
(workload, algorithm, seed)
demo/comparison/analysis_hypervolume.py:55
↓ 3 callersMethodlock
(self)
transopt/benchmark/problem_base/tab_problem.py:311
↓ 3 callersFunctionmodify_lex_file
(tex_path, pdf_path)
transopt/ResultAnalysis/PlotAnalysis.py:562
↓ 3 callersFunctionpdf_to_png
(pictures_path)
transopt/ResultAnalysis/AnalysisReport.py:6
↓ 3 callersMethodpredict
(self, X, full_cov=False)
transopt/optimizer/MultiObjOptimizer/CauMOpt.py:252
↓ 3 callersMethodpredict_by_id
(self, X, idx, full_cov=False)
transopt/optimizer/MultiObjOptimizer/MoeadEGO.py:150
↓ 3 callersMethodquasi_sample
(self, n, fix_input = None)
transopt/optimizer/model/hebo.py:64
↓ 3 callersMethodraw_predict
(self, X, model)
transopt/optimizer/MultiObjOptimizer/CauMOpt.py:287
↓ 3 callersMethodreplace_nans_in_cat_columns
Helper function to replace nan values in categorical features / columns by a non-used value. Here: Min - 1.
transopt/utils/openml_data_manager.py:303
↓ 3 callersMethodreset
(self,)
transopt/optimizer/pretrain/deepkernelpretrain.py:30
↓ 3 callersMethodrvs
(self, n)
transopt/utils/Prior.py:348
↓ 3 callersMethodset_XY
(self, X=None, Y=None)
transopt/optimizer/SingleObjOptimizer/RGPEOptimizer.py:211
↓ 3 callersMethodsuggest
(self, n_suggestions=1, fix_input = None)
transopt/optimizer/model/hebo.py:128
↓ 3 callersMethodtiles
(i,lo=0,hi=1)
transopt/utils/sk.py:176
↓ 3 callersMethodto_dict
(self)
transopt/agent/chat/openai_chat.py:41
↓ 3 callersMethodtrain
(self, configuration: dict)
transopt/benchmark/HPO/HPO.py:215
↓ 3 callersMethodupdate
(self, minibatches, unlabeled=None)
transopt/benchmark/HPOOOD/algorithms.py:1045
↓ 3 callersMethodupdate_model
(self, Data)
transopt/optimizer/SingleObjOptimizer/MultitaskOptimizer.py:90
↓ 3 callersMethodupdate_model
(self, Data: Dict)
transopt/optimizer/SingleObjOptimizer/RGPEOptimizer.py:193
↓ 3 callersMethodwrite
(self, message)
transopt/benchmark/HPOOOD/misc.py:219
↓ 2 callersFunctionConstructOptimizer
Create the optimizer object.
transopt/optimizer/construct_optimizer.py:9
↓ 2 callersFunctionInstantiateProblems
( tasks: dict = None, seed: int = 0, remote: bool = False, server_url: str = None )
transopt/benchmark/instantiate_problems.py:6
↓ 2 callersFunctionMutualInformation
(ab:AnalysisBase, dataset_name, method, seed)
transopt/ResultAnalysis/CorrelationAnalysis.py:19
↓ 2 callersMethod__init__
(self, root=None, augment=False)
transopt/benchmark/HPO/datasets.py:92
↓ 2 callersMethod__init__
(self, input_size, hidden_size=[32,32,32,32], dropout=0.0)
transopt/optimizer/model/deepkernel.py:61
↓ 2 callersMethod__init__
The constructor for the DyHPO model. Args: configuration: The configuration to be used for the different
transopt/optimizer/model/dyhpo.py:126
↓ 2 callersMethod__init__
(self, dataset, max_epoch=30, batch_size=5, lr=0.01, num_centers=5, show_details=False)
transopt/optimizer/model/rbfn.py:54
↓ 2 callersMethod__init__
(self, input_size, hidden_size=[32,32,32,32], dropout=0.0)
transopt/optimizer/pretrain/deepkernelpretrain.py:51
↓ 2 callersMethod_add_lsh_vector
(self, dataset_name, dataset_info)
transopt/datamanager/manager.py:45
↓ 2 callersMethod_calculate_weights
(self, alpha: float = 0.0)
transopt/optimizer/model/rgpe.py:184
↓ 2 callersMethod_calculate_weights
(self, alpha: float = 0.0)
transopt/optimizer/model/sgpt.py:164
↓ 2 callersFunction_cast_int_to_random_state
Helper function to cast ``rng`` from int to np.random.RandomState if necessary. Parameters ---------- rng : int, np.random.RandomSta
transopt/utils/rng_helper.py:42
↓ 2 callersFunction_check_dir
Check whether dir exists and if not create it
transopt/utils/openml_data_manager.py:36
↓ 2 callersMethod_compute_acq
(self, x)
transopt/optimizer/acquisition_function/smsego.py:21
↓ 2 callersMethod_compute_residuals
Determine the difference between given y-values and the sum of predicted values from the models in 'source_gps'. Args: da
transopt/optimizer/model/mhgp.py:62
↓ 2 callersMethod_create_data_list
(self, combinations, root_dir, transforms)
transopt/benchmark/HPOOOD/ooddatasets.py:405
↓ 2 callersMethod_create_model
(self, X, Y)
transopt/optimizer/model/smsego.py:32
↓ 2 callersMethod_execute
(self, task, args=(), timeout=None, commit=True)
transopt/datamanager/database.py:104
↓ 2 callersMethod_get_pipeline
Create the scikit-learn (training-)pipeline
transopt/benchmark/HPO/HPOAdaBoost.py:312
↓ 2 callersMethod_get_pipeline
Create the scikit-learn (training-)pipeline
transopt/benchmark/HPO/HPOXGBoost.py:312
↓ 2 callersMethod_handle_response
(self, response)
transopt/remote/experiment_client.py:10
↓ 2 callersMethod_init_optimizer
(self)
transopt/benchmark/HPOOOD/algorithms.py:1327
↓ 2 callersMethod_initialize_modules
(self)
transopt/agent/services.py:44
↓ 2 callersMethod_kl_penalty
(p_mean, q_mean, p_var, q_var)
transopt/benchmark/HPOOOD/algorithms.py:402
↓ 2 callersFunction_lhsmaximin
(d, samples, iterations, lhstype)
transopt/optimizer/sampler/lhs_BAK.py:76
↓ 2 callersFunction_lhsmu
(d, samples=None, corr=None, M=5)
transopt/optimizer/sampler/lhs_BAK.py:114
↓ 2 callersFunction_load_data
Helper-function to load the data from the OpenML website.
transopt/utils/openml_data_manager.py:86
↓ 2 callersMethodadd_query_num
(self)
transopt/benchmark/problem_base/transfer_problem.py:150
↓ 2 callersFunctionaggregate_importances
Aggregates a list of importance dataframes by taking the mean of importance scores across all repetitions.
demo/importances/get_feature_importances.py:71
↓ 2 callersFunctionanalysis_pipeline
(Exper_folder, tasks, methods, seeds, args)
transopt/ResultAnalysis/AnalysisPipeline.py:11
↓ 2 callersFunctionbootstrap
two lists y0,z0 are the same if the same patterns can be seen in all of them, as well as in 100s to 1000s sub-samples from each. From p220 t
transopt/utils/sk.py:106
↓ 2 callersFunctioncal_jacard_similarity
(cfg1, cfg2)
demo/experiment_lsh_validity.py:108
↓ 2 callersFunctioncalc_hypervolume
Calculate hypervolume Example usage: Y = np.array([[1, 2], [2, 1], [1.5, 1.5]]) ref_point = np.array([2.5, 2.5]) hypervolume = c
transopt/utils/pareto.py:74
↓ 2 callersFunctioncalc_hypervolume
calculate pareto hypervolume Parameters ---------- y : numpy.array output data w_ref : numpy.array reference poi
transopt/utils/hypervolume.py:183
↓ 2 callersFunctioncalculate_gini_index
(labels)
transopt/optimizer/MultiObjOptimizer/CauMOpt.py:14
↓ 2 callersMethodcheck_unique
(self, rec : pd.DataFrame)
transopt/optimizer/model/hebo.py:199
↓ 2 callersFunctioncliffsDelta
By pre-soring the lists, this cliffsDelta runs in NlogN time
transopt/utils/sk.py:84
↓ 2 callersFunctioncollect_all_data
(workload)
demo/comparison/analysis_plot.py:73
↓ 2 callersMethodcommit_transaction
(self)
transopt/datamanager/database.py:164
↓ 2 callersMethodcompute_A
(self, lst_ni)
transopt/utils/Prior.py:503
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