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github.com/COLA-Laboratory/OmniGenBench @main

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1,142 symbols 3,950 edges 128 files 986 documented · 86%
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Core symbols most depended-on inside this repo

get
called by 328
omnigenbench/auto/config/auto_config.py
fprint
called by 319
omnigenbench/src/misc/utils.py
pop
called by 156
omnigenbench/auto/config/auto_config.py
items
called by 101
omnigenbench/auto/config/auto_config.py
load
called by 79
omnigenbench/src/abc/abstract_model.py
from_pretrained
called by 57
omnigenbench/src/abc/abstract_model.py
update
called by 48
omnigenbench/auto/config/auto_config.py
to
called by 47
omnigenbench/src/model/embedding/model.py

Shape

Method 799
Class 187
Function 156

Languages

Python100%

Modules by API surface

omnigenbench/src/model/baselines.py170 symbols
omnigenbench/src/explainability/shared_methods/squid_explainer.py35 symbols
tests/test_genomic_embeddings.py33 symbols
omnigenbench/src/model/regression/model.py33 symbols
tests/test_structure_prediction.py32 symbols
tests/test_autobench_autotrain.py31 symbols
tests/test_cli_commands.py29 symbols
tests/test_token_classification.py28 symbols
omnigenbench/src/model/classification/model.py28 symbols
omnigenbench/src/abc/abstract_model.py28 symbols
omnigenbench/src/abc/abstract_dataset.py28 symbols
tests/test_autoinfer_cli.py27 symbols

For agents

$ claude mcp add OmniGenBench \
  -- python -m otcore.mcp_server <graph>

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