Method SNPposition

src/SNPposition.cpp:24–37

#include <assert.h>

SNPposition::SNPposition(int position, char* alt) //for a VCF line
{
    position_=position;
    if (strlen(alt) == 1)   {
        nucleotide_ = alt[0];
    }  else  {
        char* strs[4];
        unsigned strs_cnt = split(alt, ',', strs);
        nucleotide_ = strs[0][0];
    }
    freq_ = 0; // EV: must be initialized
    status_ = 0; // EV: must be initialized
    bin_=NA; //before initialization
}


SNPposition::SNPposition(int position, char* letters, const char* strand, const char* ref) //for .txt line