| 203 | WESanalysis_=WESanalysis; |
| 204 | } |
| 205 | void SNPinGenome::setCopyNumberFromPileup(bool CopyNumberFromPileup) { |
| 206 | CopyNumberFromPileup_=CopyNumberFromPileup; |
| 207 | } |
| 208 | |
| 209 | void SNPinGenome::perform(std::string const& mateFile, const std::string& inputFormat, int minimalTotalLetterCountPerPosition, |
| 210 | int minimalQualityPerPosition, bool noisyData,bool CompleteGenomicsData,GenomeCopyNumber& genomeCopyNumber, double breakPointThreshold, |