Method printCopyNumber

src/GenomeCopyNumber.cpp:2878–2888

void GenomeCopyNumber::printCopyNumber(std::string const& outFile) {
	const char * name = outFile.c_str();
	std::ofstream file;
	file.open(name);
	map<string,int>::iterator it;
	for ( it=chromosomesInd_.begin() ; it != chromosomesInd_.end(); it++ ) {
		printCopyNumber((*it).first,file);
	}
	file.close();
	cout << "printing counts into "<<outFile <<"\n";
}

void GenomeCopyNumber::printCGprofile(std::string const& outFile) {
	const char * name = outFile.c_str();