Method printCGprofile

src/GenomeCopyNumber.cpp:2890–2900

}

void GenomeCopyNumber::printCGprofile(std::string const& outFile) {
	const char * name = outFile.c_str();
	std::ofstream file;
	file.open(name);
	map<string,int>::iterator it;
	for ( it=chromosomesInd_.begin() ; it != chromosomesInd_.end(); it++ ) {
		printCGprofile((*it).first,file);
	}
	file.close();
	cout << "CG-content printed into "<<outFile <<"\n";
}

void GenomeCopyNumber::printRatio(std::string const& chr, std::string const& outFile, bool printNA) {
	cout << "printing ratio for "<<chr<<" into "<<outFile <<"\n";