Method calculateCopyNumberMedians

src/GenomeCopyNumber.cpp:3213–3221

}

void GenomeCopyNumber::calculateCopyNumberMedians (int minCNAlength, bool noisyData, bool CompleteGenomicsData) {

	cout << "..calculating medians for copy numbers\n";
	vector<ChrCopyNumber>::iterator it;
	for ( it=chrCopyNumber_.begin() ; it != chrCopyNumber_.end(); it++ ) {
        cout << "..calculating medians for " << it->getChromosome()<< "\n";
		it->calculateCopyNumberMedian(ploidy_, minCNAlength, noisyData, CompleteGenomicsData, isRatioLogged_);
	}
}

void GenomeCopyNumber::shiftNeutalRatioTo1() {