Method calculateBreakpoints

src/GenomeCopyNumber.cpp:223–234

}

void GenomeCopyNumber::calculateBreakpoints(double breakPointThreshold, int breakPointType) {
	cout << "..Calculating breakpoints, breakPointThreshold = " <<breakPointThreshold<<"\n";
	ThreadPool* thrPool = ThreadPoolManager::getInstance()->newThreadPool("ChrCopyNumber_calculateBreakpoint");
	for (vector<ChrCopyNumber>::iterator it = chrCopyNumber_.begin(); it != chrCopyNumber_.end(); it++) {
	  ChrCopyNumber& chrCopyNumber = *it;
	  ChrCopyNumberCalculateBreakpointArgWrapper* bkpArg = new ChrCopyNumberCalculateBreakpointArgWrapper(chrCopyNumber, breakPointThreshold, breakPointType);
	  thrPool->addThread(ChrCopyNumber_calculateBreakpoint_wrapper, bkpArg);
	}

	thrPool->run();
	delete thrPool;
}

void GenomeCopyNumber::calculateBAFBreakpoints(double breakPointThreshold, int breakPointType) {
	cout << "..Calculating breakpoints for BAF, breakPointThreshold = " <<breakPointThreshold<<"\n";