Method removeLargeExons

src/ChrCopyNumber.cpp:1267–1276

int ChrCopyNumber::removeLargeExons(float threshold) {
    int howManyRemoved = 0;
    for (int i =0; i< length_; i++) {
        if (ends_[i]-coordinates_[i]>threshold) {
            howManyRemoved++;
            readCount_[i]=NA;
        }
    }
    return howManyRemoved;
}

void ChrCopyNumber::recalcFlanks(int telo_centromeric_flanks, int minNumberOfWindows) {
    int maxRegionLengthToDelete = int(telo_centromeric_flanks/step_);