| 2462 | } |
| 2463 | |
| 2464 | std::string getXYBAFforPloidy(int ploidy) { |
| 2465 | if (ploidy>1) { |
| 2466 | int Acount = ploidy/2; |
| 2467 | string BAF = "A"; |
| 2468 | for (int i = 1; i<Acount;i++) |
| 2469 | BAF += "A"; |
| 2470 | return BAF; |
| 2471 | } else { |
| 2472 | if (ploidy==1) |
| 2473 | return "A"; |
| 2474 | } |
| 2475 | return ""; |
| 2476 | } |
| 2477 | |
| 2478 | bool getELANDinfo(std::string line,std::string &chr1,std::string &chr2,std::string &orient1,std::string &orient2,int &left,int &right, int &insertSize) { |
| 2479 | if (! line.length()) |
no outgoing calls
no test coverage detected