| 183 | extern void* GenomeCopyNumber_calculateBreakpoint_wrapper(void *arg); |
| 184 | |
| 185 | struct GenomeCopyNumberReadMateFileArgWrapper : public ThreadArg { |
| 186 | SNPinGenome& snpInGenome; |
| 187 | std::string mateFile; |
| 188 | std::string inputFormat; |
| 189 | int minimalTotalLetterCountPerPosition; |
| 190 | int minimalQualityPerPosition; |
| 191 | GenomeCopyNumber* p_genomeCopyNumber; |
| 192 | std::string chrLenFileName; |
| 193 | int windowSize; |
| 194 | int step; |
| 195 | std::string targetBed; |
| 196 | |
| 197 | GenomeCopyNumberReadMateFileArgWrapper(SNPinGenome& snpInGenome, std::string const& mateFile, const std::string& inputFormat, int minimalTotalLetterCountPerPosition, int minimalQualityPerPosition) : snpInGenome(snpInGenome), mateFile(mateFile), inputFormat(inputFormat), minimalTotalLetterCountPerPosition(minimalTotalLetterCountPerPosition), minimalQualityPerPosition(minimalQualityPerPosition), p_genomeCopyNumber(NULL), windowSize(0), step(0) { } |
| 198 | |
| 199 | GenomeCopyNumberReadMateFileArgWrapper(SNPinGenome& snpInGenome, std::string const& mateFile, std::string const& inputFormat, int minimalTotalLetterCountPerPosition, int minimalQualityPerPosition, GenomeCopyNumber& genomeCopyNumber, std::string const& chrLenFileName, int windowSize, int step, std::string targetBed) : snpInGenome(snpInGenome), mateFile(mateFile), inputFormat(inputFormat), minimalTotalLetterCountPerPosition(minimalTotalLetterCountPerPosition), minimalQualityPerPosition(minimalQualityPerPosition), p_genomeCopyNumber(&genomeCopyNumber), chrLenFileName(chrLenFileName), windowSize(windowSize), step(step), targetBed(targetBed) { } |
| 200 | }; |
| 201 | |
| 202 | extern void* GenomeCopyNumber_readMateFile_wrapper(void *arg); |
| 203 |
nothing calls this directly
no outgoing calls
no test coverage detected