Method reverseComplement

Common/Kmer.cpp:278–295

Reverse-complement this sequence. */

/** Reverse-complement this sequence. */
void Kmer::reverseComplement()
{
	Seq seq = load((uint8_t*)m_seq);

	// Complement the bits.
	if (!opt::colourSpace)
		seq.flip();

	// Shift the bits flush to the right of the double word.
	seq >>= seq.size() - 2*s_length;

	storeReverse((uint8_t*)m_seq, seq);

	// Reverse the pairs of bits withing a byte.
	unsigned numBytes = bytes();
	for (unsigned i = 0; i < numBytes; i++)
		m_seq[i] = swapBases[(uint8_t)m_seq[i]];
}

bool Kmer::isCanonical() const
{