Function findRepeats

SimpleGraph/SimpleGraph.cpp:237–254

Return the set of contigs that appear more than once in a single * solution. */

 * solution.
 */
static set<ContigID> findRepeats(ContigID seed,
	const ContigPaths& solutions)
{
	set<ContigID> repeats;
	for (ContigPaths::const_iterator solIt = solutions.begin();
			solIt != solutions.end(); ++solIt) {
		map<ContigID, unsigned> count;
		count[seed]++;
		for (ContigPath::const_iterator it = solIt->begin();
				it != solIt->end(); ++it)
			count[it->contigIndex()]++;
		for (map<ContigID, unsigned>::const_iterator
				it = count.begin(); it != count.end(); ++it)
			if (it->second > 1)
				repeats.insert(it->first);
	}
	return repeats;
}

/** The fewest number of pairs in a distance estimate. */
static unsigned g_minNumPairs = UINT_MAX;