Function removeContigs

PathOverlap/PathOverlap.cpp:372–387

Remove the overlapping portion of the specified contig. */

/** Remove the overlapping portion of the specified contig. */
static void
removeContigs(ContigPath& path, unsigned first, unsigned last)
{
	assert(first <= path.size());
	assert(last <= path.size());
	if (first < last) {
		recordTrimmedContigs(path.begin(), path.begin() + first);
		recordTrimmedContigs(path.begin() + last, path.end());
		path.erase(path.begin() + last, path.end());
		path.erase(path.begin(), path.begin() + first);
	} else {
		recordTrimmedContigs(path.begin(), path.end());
		path.clear();
	}
	removeAmbiguousContigs(path);
}

/** Find the largest overlap for each contig and remove it. */
static void