Function isSingleEnd

ParseAligns/ParseAligns.cpp:665–670

Return true if the specified read ID is of a single-end read. */

/** Return true if the specified read ID is of a single-end read. */
static bool
isSingleEnd(const string& id)
{
	unsigned l = id.length();
	return endsWith(id, ".fn") || (l > 6 && id.substr(l - 6, 5) == ".part");
}

/** Return the mate ID of the specified read ID. */
static string