Function getPath

MergePaths/MergePaths.cpp:313–322

Return the specified path. */

/** Return the specified path. */
static ContigPath
getPath(const ContigPathMap& paths, ContigNode u)
{
	ContigPathMap::const_iterator it = paths.find(u.contigIndex());
	assert(it != paths.end());
	ContigPath path = it->second;
	if (u.sense())
		reverseComplement(path.begin(), path.end());
	return path;
}

/** Find the overlaps between paths and add edges to the graph. */
static void