Function getSequence

FilterGraph/FilterGraph.cc:554–561

Return the sequence of vertex u. */

/** Return the sequence of vertex u. */
static string
getSequence(const Graph& g, vertex_descriptor u)
{
	size_t i = get(vertex_contig_index, g, u);
	assert(i < g_contigs.size());
	string seq(g_contigs[i]);
	return get(vertex_sense, g, u) ? reverseComplement(seq) : seq;
}

/** Return whether the specified edge is inconsistent. */
struct is_edge_inconsistent