Function coverageHistogram

Assembly/CoverageAlgorithm.h:12–25

Return the k-mer coverage histogram. */

/** Return the k-mer coverage histogram. */
static inline
Histogram coverageHistogram(const SequenceCollectionHash& c)
{
	typedef SequenceCollectionHash Graph;

	Histogram h;
	for (Graph::const_iterator it = c.begin();
			it != c.end(); ++it) {
		if (it->second.deleted())
			continue;
		h.insert(it->second.getMultiplicity());
	}
	return h;
}

/** Calculate a k-mer coverage threshold from the given k-mer coverage
 * histogram. */