Function applyKmerCoverageThreshold

Assembly/CoverageAlgorithm.h:116–129

Remove all k-mers with multiplicity lower than the given threshold */

/** Remove all k-mers with multiplicity lower than the given threshold */
static inline
size_t applyKmerCoverageThreshold(SequenceCollectionHash& c, unsigned kc)
{
	if (kc == 0)
		return 0;

	for (SequenceCollectionHash::iterator it = c.begin();
		it != c.end(); ++it) {
		if (it->second.getMultiplicity() < kc)
			it->second.setFlag(SF_DELETE);
	}

	return c.cleanup();
}

} // namespace AssemblyAlgorithms