Initialize dialign. */
| 81 | |
| 82 | /** Initialize dialign. */ |
| 83 | void initDialign() |
| 84 | { |
| 85 | // Score matrix |
| 86 | smatrix = strlen(para->SCR_MATRIX_FILE_NAME) > 0 |
| 87 | ? read_scr_matrix(para->SCR_MATRIX_FILE_NAME) |
| 88 | : newDefaultScoreMatrix(); |
| 89 | if (para->DEBUG > 5) |
| 90 | print_scr_matrix(smatrix); |
| 91 | |
| 92 | // Probability distribution for diagonal lengths |
| 93 | pdist = strlen(para->DIAG_PROB_FILE_NAME) > 0 |
| 94 | ? read_diag_prob_dist(smatrix, para->DIAG_PROB_FILE_NAME) |
| 95 | : newDefaultDiagProbDist(); |
| 96 | } |
| 97 | |
| 98 | static void free_scr_matrix(struct scr_matrix* smatrix) |
| 99 | { |
no test coverage detected