| 9 | #include <vector> |
| 10 | |
| 11 | class SequenceTreeNode : public ContigNode |
| 12 | { |
| 13 | |
| 14 | public: |
| 15 | SequenceTreeNode( |
| 16 | const ContigNode& contigNode, |
| 17 | const int overlap, |
| 18 | const int maxLength, |
| 19 | const bool forward); |
| 20 | |
| 21 | std::vector<SequenceTreeNode> getChildren( |
| 22 | const int maxChildren = std::numeric_limits<int>::max()) const; |
| 23 | const Sequence treeSequence() const; |
| 24 | |
| 25 | int treeSequenceStart; |
| 26 | int treeSequenceLength; |
| 27 | int maxLength; |
| 28 | bool forward; |
| 29 | }; |
| 30 | |
| 31 | const int EXPECTED_BASES_PER_NODE = 4; |
| 32 |