(byte b)
| 1238 | } |
| 1239 | |
| 1240 | public static final byte complement(byte b) { |
| 1241 | switch(b) { |
| 1242 | case CHAR_A_BYTE: |
| 1243 | return CHAR_T_BYTE; |
| 1244 | case CHAR_C_BYTE: |
| 1245 | return CHAR_G_BYTE; |
| 1246 | case CHAR_G_BYTE: |
| 1247 | return CHAR_C_BYTE; |
| 1248 | case CHAR_T_BYTE: |
| 1249 | return CHAR_A_BYTE; |
| 1250 | case CHAR_U_BYTE: |
| 1251 | return CHAR_A_BYTE; |
| 1252 | } |
| 1253 | |
| 1254 | return b; |
| 1255 | } |
| 1256 | |
| 1257 | public static final boolean isReverseComplement(byte[] seq1, byte[] seq2) { |
| 1258 | int len = seq1.length; |
no outgoing calls
no test coverage detected