Method bitsToSeq

src/rnabloom/util/SeqBitsUtils.java:293–311

(byte[] bytes, int seqLen)

    }
    
    public static String bitsToSeq(byte[] bytes, int seqLen) {
        int numFullBytes = seqLen / 4;
        int numExtraBases = seqLen % 4;
        
        char[] sb = new char[seqLen];
        for (int i=0; i<numFullBytes; ++i) {
            getTetramer(bytes[i]).getChars(0, 4, sb, i*4);
        }
        
        if (numExtraBases > 0) {
            String t = getTetramer(bytes[numFullBytes]);
            int offset = numFullBytes*4;
            for (int i=0; i<numExtraBases; ++i) {
                sb[offset + i] = t.charAt(i);
            }
        }
        
        return new String(sb);
    }
    
    public static String bitsToSeqParallelized(byte[] bytes, int seqLen) {
        int numFullBytes = seqLen / 4;