Method hasReverseComplementArtifact

src/rnabloom/util/PafUtils.java:105–113

(PafRecord r, int maxEdgeClip)

    }
    
    public static boolean hasReverseComplementArtifact(PafRecord r, int maxEdgeClip) {
        if (r.qName.equals(r.tName) && r.reverseComplemented) {
            if (r.qStart <= maxEdgeClip || r.qLen - r.qEnd <= maxEdgeClip) {
                return true;
            }
        }
        
        return false;
    }
    
    public static enum CONTAIN_STATUS {QUERY, TARGET, BOTH, NEITHER};