MCPcopy Create free account
hub / github.com/BirolLab/RNA-Bloom / write

Method write

src/rnabloom/io/FastaWriter.java:40–51  ·  view source on GitHub ↗
(String header, String seq)

Source from the content-addressed store, hash-verified

38 }
39
40 public synchronized void write(String header, String seq) throws IOException {
41 out.write('>');
42 out.write(header);
43 out.write('\n');
44 if (writeUracil) {
45 out.write(seq.replace('T', 'U'));
46 }
47 else {
48 out.write(seq);
49 }
50 out.write('\n');
51 }
52
53 public void close() throws IOException {
54 out.flush();

Callers 15

mergeClusterFastasMethod · 0.95
clusterLongReadsMethod · 0.95
splitFastaByLengthMethod · 0.95
mergePooledAssembliesMethod · 0.95
trimSplitByReadDepthMethod · 0.95
emptyOrphanRecordsMethod · 0.95
extractSimplePathsMethod · 0.95

Calls

no outgoing calls

Tested by

no test coverage detected