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hub / github.com/BirolLab/RNA-Bloom / getRightVariants

Method getRightVariants

src/rnabloom/graph/Kmer.java:382–384  ·  view source on GitHub ↗
(int k, int numHash, BloomFilterDeBruijnGraph graph)

Source from the content-addressed store, hash-verified

380 }
381
382 public ArrayDeque<Kmer> getRightVariants(int k, int numHash, BloomFilterDeBruijnGraph graph) {
383 return getRightVariants(k, numHash, graph, 1);
384 }
385
386 public ArrayDeque<Kmer> getRightVariants(int k, int numHash, BloomFilterDeBruijnGraph graph, float minKmerCov) {
387 ArrayDeque<Kmer> result = new ArrayDeque<>(4);

Callers 6

correctEdgeErrorsMethod · 0.95
naiveExtendLeftMethod · 0.95
correctErrorHelper2Method · 0.45
correctErrorHelperMethod · 0.45
correctMismatchesMethod · 0.45
isBranchFreeMethod · 0.45

Calls 5

startMethod · 0.95
nextMethod · 0.95
getAltNucleotidesMethod · 0.80
getCountMethod · 0.65
addMethod · 0.65

Tested by

no test coverage detected