Method restoreQuartilesFromFile

src/rnabloom/RNABloom.java:2681–2713

(String path)

    }
    
    public Quartiles restoreQuartilesFromFile(String path) throws IOException {
        Quartiles q = new Quartiles();
        
        BufferedReader br = getTextFileReader(path);
        String line;
        while ((line = br.readLine()) != null) {
            String[] entry = line.split(LABEL_SEPARATOR);
            String key = entry[0];
            String val = entry[1];
            switch(key) {
                case LABEL_MIN:
                    q.min = Integer.parseInt(val);
                    break;
                case LABEL_Q1:
                    q.q1 = Integer.parseInt(val);
                    break;
                case LABEL_MEDIAN:
                    q.median = Integer.parseInt(val);
                    break;
                case LABEL_Q3:
                    q.q3 = Integer.parseInt(val);
                    break;
                case LABEL_MAX:
                    q.max = Integer.parseInt(val);
                    break;
            }
        }
        br.close();

        longFragmentLengthThreshold = q.q1;
          
        return q;
    }
        
    private static int getPairedReadsMaxDistance(Quartiles q) {
        return q.q3 + ((q.q3 - q.q1) * 3 / 2); // 1.5*IQR